RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 GPRC5AQ8NFJ5 357 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 GPR63Q9BZJ6 419 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 TM6SF2Q9BZW4 377 aa11.1□□□□□ -0.63
LDLR-208ENST00000558518 POLR2AP24928 1970 aaKnown RBP11.1□□□□□ -0.63
LDLR-208ENST00000558518 ILVBLA1L0T0 632 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 CTDSP2O14595 271 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 SLC10A3P09131 477 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 ODC1P11926 461 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 KRT20P35900 424 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 RGRP47804 291 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 MLLT6P55198 1093 aaPredicted RBP11.09□□□□□ -0.63
LDLR-208ENST00000558518 OR2B6P58173 313 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 TIAL1Q01085 375 aaKnown RBP eCLIP11.09□□□□□ -0.63
LDLR-208ENST00000558518 FOXM1Q08050 763 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 MFSD10Q14728 455 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 LRIT3Q3SXY7 679 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 APOLD1Q96LR9 279 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 ZNF221Q9UK13 617 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 B3GNT3Q9Y2A9 372 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 MED26O95402 600 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 SNAI1O95863 264 aaPredicted RBP11.09□□□□□ -0.63
LDLR-208ENST00000558518 PPP5CP53041 499 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 CD83Q01151 205 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 OR4F3Q6IEY1 312 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 SETD9Q8NE22 299 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 MYEOVQ96EZ4 313 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 RMND5AQ9H871 391 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 TIGARQ9NQ88 270 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 FAM105AQ9NUU6 356 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 PAQR5Q9NXK6 330 aaPredicted RBP11.09□□□□□ -0.63
LDLR-208ENST00000558518 GPR83Q9NYM4 423 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 BTBD3Q9Y2F9 522 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 HHLA1C9JL84 531 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 RFXANKO14593 260 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 MMP2P08253 660 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 STSP08842 583 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 JUNBP17275 347 aaPredicted RBP11.09□□□□□ -0.63
LDLR-208ENST00000558518 OR1E2P47887 323 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 CRISP3P54108 245 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 PPP2R2BQ00005 443 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 TOP3AQ13472 1001 aaPredicted RBP11.09□□□□□ -0.63
LDLR-208ENST00000558518 ZFP69Q49AA0 526 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 ZNF691Q5VV52 312 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 USP43Q70EL4 1123 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 SCD5Q86SK9 330 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 THEM5Q8N1Q8 247 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 LINC01465Q8N7H1 131 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 CDK5RAP1Q96SZ6 601 aaKnown RBP11.09□□□□□ -0.63
LDLR-208ENST00000558518 CIPCQ9C0C6 399 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 SCUBE2Q9NQ36 999 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 IMPAD1Q9NX62 359 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 COQ3Q9NZJ6 369 aa11.09□□□□□ -0.63
LDLR-208ENST00000558518 ANKRD34BA5PLL1 514 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 TTC34A8MYJ7 566 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 EVPLLA8MZ36 301 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 UPK1BO75841 260 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 ATXN1LP0C7T5 689 aaKnown RBP11.08□□□□□ -0.64
LDLR-208ENST00000558518 C7P10643 843 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 ITIH1P19827 911 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 CDKN2CP42773 168 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 TUFMP49411 452 aaKnown RBP11.08□□□□□ -0.64
LDLR-208ENST00000558518 DEFA1P59665 94 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 DEFA3P59666 94 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 RPS24P62847 133 aaKnown RBP11.08□□□□□ -0.64
LDLR-208ENST00000558518 RPP38P78345 283 aaKnown RBP11.08□□□□□ -0.64
LDLR-208ENST00000558518 MS4A13Q5J8X5 152 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 BHLHA9Q7RTU4 235 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 METTL4Q8N3J2 472 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 KLHDC9Q8NEP7 349 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 RHOXF1Q8NHV9 184 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 MAL2Q969L2 176 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 TTPALQ9BTX7 342 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 ACTL8Q9H568 366 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 REEP1Q9H902 201 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 ABCB9Q9NP78 766 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 ACOT13Q9NPJ3 140 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 SLC25A37Q9NYZ2 338 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 GPRC5BQ9NZH0 403 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 ZIM2Q9NZV7 527 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 ITGB1BP2Q9UKP3 347 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 RRN3P2A6NIE6 340 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 GABRDO14764 452 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 ALPIP09923 528 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 HOXD11P31277 338 aaPredicted RBP11.08□□□□□ -0.64
LDLR-208ENST00000558518 RPL34P49207 117 aaKnown RBP11.08□□□□□ -0.64
LDLR-208ENST00000558518 TGM4P49221 684 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 CLK3P49761 638 aaKnown RBP11.08□□□□□ -0.64
LDLR-208ENST00000558518 DAPP51397 102 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 KCNQ1P51787 676 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 VARS2Q5ST30 1063 aaKnown RBP11.08□□□□□ -0.64
LDLR-208ENST00000558518 SVOPQ8N4V2 548 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 AMER2Q8N7J2 671 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 BRSK1Q8TDC3 778 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 SELENOMQ8WWX9 145 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 FBXO32Q969P5 355 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 ZNF641Q96N77 438 aaPredicted RBP11.08□□□□□ -0.64
LDLR-208ENST00000558518 PANX1Q96RD7 426 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 TMEM246Q9BRR3 403 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 MUC13Q9H3R2 512 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 RAD18Q9NS91 495 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms