RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 RCVRNP35243 200 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 NRIP1P48552 1158 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 HSPA7P48741 367 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 DAPP51397 102 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 SLC35A2P78381 396 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 FOXC1Q12948 553 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 SLC14A1Q13336 389 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 TUSC3Q13454 348 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 GTF2H2Q13888 395 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 TAF1AQ15573 450 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-212ENST00000552491 KCNJ8Q15842 424 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 CARTPTQ16568 116 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 ZRANB3Q5FWF4 1079 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 AGAP7PQ5VUJ5 663 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 CES5AQ6NT32 575 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 GTF2H2CQ6P1K8 395 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 CCDC81Q6ZN84 652 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 GPR149Q86SP6 731 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 GALNT10Q86SR1 603 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 SLC22A16Q86VW1 577 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 CALHM3Q86XJ0 350 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 ZNF280BQ86YH2 543 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 CCDC71Q8IV32 467 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-212ENST00000552491 MICU2Q8IYU8 434 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 SLC22A15Q8IZD6 547 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 SLC7A5P1Q8MH63 180 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 LIX1Q8N485 282 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 ARL10Q8N8L6 244 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 LPCAT1Q8NF37 534 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 OR52E4Q8NGH9 312 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 LKAAEAR1Q8TD35 194 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 GLMNQ92990 594 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 EID2BQ96D98 161 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 INPP5KQ9BT40 448 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 SLIRPQ9GZT3 109 aaKnown RBP5.3□□□□□ -1.56
LIMA1-212ENST00000552491 DUSP21Q9H596 190 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 EPS8L2Q9H6S3 715 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 KAT8Q9H7Z6 458 aaKnown RBP5.3□□□□□ -1.56
LIMA1-212ENST00000552491 IPPKQ9H8X2 491 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 FBXO8Q9NRD0 319 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 MTPAPQ9NVV4 582 aaKnown RBP eCLIP5.3□□□□□ -1.56
LIMA1-212ENST00000552491 MARCH2Q9P0N8 246 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 C3orf18Q9UK00 162 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 AGO1Q9UL18 857 aaKnown RBP5.3□□□□□ -1.56
LIMA1-212ENST00000552491 PNMA8BQ9ULN7 279 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-212ENST00000552491 PADI3Q9ULW8 664 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 ABCG2Q9UNQ0 655 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 GPC6Q9Y625 555 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-212ENST00000552491 SCN10AQ9Y5Y9 1956 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 MOXD2PA6NHM9 499 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 M0QX08 132 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 SLC22A1O15245 554 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 TLR5O60602 858 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 FADS2O95864 444 aaKnown RBP5.3□□□□□ -1.56
LIMA1-212ENST00000552491 IGLV3-27P01718 113 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 F11P03951 625 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 PABPC1P11940 636 aaKnown RBP5.3□□□□□ -1.56
LIMA1-212ENST00000552491 MYCLP1P12525 358 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-212ENST00000552491 CD9P21926 228 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 PSMA3P25788 255 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 PTPN6P29350 595 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 CDKN2CP42773 168 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 CPT1AP50416 773 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 INSM1Q01101 510 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-212ENST00000552491 VAC14Q08AM6 782 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 MGAT3Q09327 533 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 SLC13A2Q13183 592 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 IL18R1Q13478 541 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 CLCA4Q14CN2 919 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 PCBP2Q15366 365 aaKnown RBP eCLIP5.3□□□□□ -1.56
LIMA1-212ENST00000552491 TRIP4Q15650 581 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-212ENST00000552491 MAPKAPK3Q16644 382 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 HIST2H2ACQ16777 129 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-212ENST00000552491 SGO1Q5FBB7 561 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 ZC3H12BQ5HYM0 836 aaKnown RBP5.3□□□□□ -1.56
LIMA1-212ENST00000552491 C10orf120Q5SQS8 335 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 SYT6Q5T7P8 510 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-212ENST00000552491 CPZQ66K79 652 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 CXCL17Q6UXB2 119 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 PLEKHG7Q6ZR37 379 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 NEK10Q6ZWH5 1172 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 MILR1Q7Z6M3 343 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 ANKRD46Q86W74 232 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 EID3Q8N140 333 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 ZCCHC7Q8N3Z6 543 aaKnown RBP5.3□□□□□ -1.56
LIMA1-212ENST00000552491 EFHBQ8N7U6 833 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 ATP6V0D2Q8N8Y2 350 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 GIPC2Q8TF65 315 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 RORBQ92753 470 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 NCLNQ969V3 563 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 ZNF566Q969W8 418 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 REXO5Q96IC2 774 aaKnown RBP5.3□□□□□ -1.56
LIMA1-212ENST00000552491 PSKH2Q96QS6 385 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 P2RY12Q9H244 342 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 CRISPLD1Q9H336 500 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 CCSER2Q9H7U1 834 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 SERHLQ9NQF3 203 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 NECTIN3Q9NQS3 549 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 NOD1Q9Y239 953 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 ZBBXA8MT70 800 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms