RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 MENTQ9BUN1 341 aa20.58■□□□□ 0.88
VPS29-206ENST00000549578 TFB2MQ9H5Q4 396 aaKnown RBP20.58■□□□□ 0.88
VPS29-206ENST00000549578 IGHV1OR21-1A0A087WYE8 117 aa20.57■□□□□ 0.88
VPS29-206ENST00000549578 COL6A2P12110 1019 aa20.57■□□□□ 0.88
VPS29-206ENST00000549578 KRT4P19013 534 aa20.57■□□□□ 0.88
VPS29-206ENST00000549578 PPM1FP49593 454 aaPredicted RBP20.57■□□□□ 0.88
VPS29-206ENST00000549578 EPHA4P54764 986 aa20.57■□□□□ 0.88
VPS29-206ENST00000549578 CROCCP2Q86T23 111 aa20.57■□□□□ 0.88
VPS29-206ENST00000549578 DENND1AQ8TEH3 1009 aa20.57■□□□□ 0.88
VPS29-206ENST00000549578 RSC1A1Q92681 617 aa20.57■□□□□ 0.88
VPS29-206ENST00000549578 SRMSQ9H3Y6 488 aa20.57■□□□□ 0.88
VPS29-206ENST00000549578 SYNDIG1Q9H7V2 258 aa20.57■□□□□ 0.88
VPS29-206ENST00000549578 UBXN7O94888 489 aa20.56■□□□□ 0.88
VPS29-206ENST00000549578 RPLP0P05388 317 aaKnown RBP20.56■□□□□ 0.88
VPS29-206ENST00000549578 GP1BAP07359 652 aa20.56■□□□□ 0.88
VPS29-206ENST00000549578 CEACAM1P13688 526 aa20.56■□□□□ 0.88
VPS29-206ENST00000549578 PKLRP30613 574 aa20.56■□□□□ 0.88
VPS29-206ENST00000549578 KCNC1P48547 511 aa20.56■□□□□ 0.88
VPS29-206ENST00000549578 CCL7P80098 99 aa20.56■□□□□ 0.88
VPS29-206ENST00000549578 KLC3Q6P597 504 aa20.56■□□□□ 0.88
VPS29-206ENST00000549578 FRA10AC1Q70Z53 315 aa20.56■□□□□ 0.88
VPS29-206ENST00000549578 AMIGO1Q86WK6 493 aa20.56■□□□□ 0.88
VPS29-206ENST00000549578 OR10G6Q8NH81 332 aa20.56■□□□□ 0.88
VPS29-206ENST00000549578 EXT2Q93063 718 aa20.56■□□□□ 0.88
VPS29-206ENST00000549578 TSNARE1Q96NA8 513 aa20.56■□□□□ 0.88
VPS29-206ENST00000549578 OGFRQ9NZT2 677 aa20.56■□□□□ 0.88
VPS29-206ENST00000549578 NOVA2Q9UNW9 492 aaKnown RBP20.56■□□□□ 0.88
VPS29-206ENST00000549578 OARD1Q9Y530 152 aa20.56■□□□□ 0.88
VPS29-206ENST00000549578 CNOT1A5YKK6 2376 aaKnown RBP20.56■□□□□ 0.88
VPS29-206ENST00000549578 A0A1W2PQM1 296 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 OR6C74A6NCV1 312 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 AGPSO00116 658 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 KDM1AO60341 852 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 RFPL3O75679 317 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 GUCA1CO95843 209 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 SLC16A8O95907 504 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 PROS1P07225 676 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 ENO2P09104 434 aaPredicted RBP20.55■□□□□ 0.88
VPS29-206ENST00000549578 HIST1H2AGP0C0S8 130 aaPredicted RBP20.55■□□□□ 0.88
VPS29-206ENST00000549578 MYZAPP0CAP1 466 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 AMD1P17707 334 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 HIST1H2ADP20671 130 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 CD1CP29017 333 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 SHMT2P34897 504 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 RAB28P51157 221 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 SIM1P81133 766 aaPredicted RBP20.55■□□□□ 0.88
VPS29-206ENST00000549578 ACAP2Q15057 778 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 TSNAXIP1Q2TAA8 658 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 C2orf73Q8N5S3 287 aaPredicted RBP20.55■□□□□ 0.88
VPS29-206ENST00000549578 AHCYL2Q96HN2 611 aaKnown RBP20.55■□□□□ 0.88
VPS29-206ENST00000549578 HIST1H2AHQ96KK5 128 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 HIST1H2AJQ99878 128 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 RTKNQ9BST9 563 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 H2AFJQ9BTM1 129 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 TRIM54Q9BYV2 358 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 ZNF446Q9NWS9 450 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 ARL15Q9NXU5 204 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 RNF112Q9ULX5 631 aa20.55■□□□□ 0.88
VPS29-206ENST00000549578 PABPN1LA6NDY0 278 aaKnown RBP20.54■□□□□ 0.88
VPS29-206ENST00000549578 BTN3A3O00478 584 aa20.54■□□□□ 0.88
VPS29-206ENST00000549578 SASH3O75995 380 aa20.54■□□□□ 0.88
VPS29-206ENST00000549578 GPLD1P80108 840 aa20.54■□□□□ 0.88
VPS29-206ENST00000549578 USP53Q70EK8 1073 aa20.54■□□□□ 0.88
VPS29-206ENST00000549578 SLCO6A1Q86UG4 719 aa20.54■□□□□ 0.88
VPS29-206ENST00000549578 TAX1BP1Q86VP1 789 aa20.54■□□□□ 0.88
VPS29-206ENST00000549578 GPSM1Q86YR5 675 aa20.54■□□□□ 0.88
VPS29-206ENST00000549578 LINC01555Q8NAE3 123 aa20.54■□□□□ 0.88
VPS29-206ENST00000549578 STAG3L4Q8TBR4 150 aa20.54■□□□□ 0.88
VPS29-206ENST00000549578 PGM2Q96G03 612 aa20.54■□□□□ 0.88
VPS29-206ENST00000549578 SCYL1Q96KG9 808 aa20.54■□□□□ 0.88
VPS29-206ENST00000549578 ATOH8Q96SQ7 321 aa20.54■□□□□ 0.88
VPS29-206ENST00000549578 LRRN3Q9H3W5 708 aa20.54■□□□□ 0.88
VPS29-206ENST00000549578 VIPAS39Q9H9C1 493 aa20.54■□□□□ 0.88
VPS29-206ENST00000549578 RDH14Q9HBH5 336 aa20.54■□□□□ 0.88
VPS29-206ENST00000549578 SPATA7Q9P0W8 599 aa20.54■□□□□ 0.88
VPS29-206ENST00000549578 ATXN7L1Q9ULK2 861 aaPredicted RBP20.54■□□□□ 0.88
VPS29-206ENST00000549578 UNC13CQ8NB66 2214 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 DCDC2BA2VCK2 349 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 NCF1BA6NI72 391 aaPredicted RBP20.53■□□□□ 0.88
VPS29-206ENST00000549578 GOLGA6L10A6NI86 522 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 NCF1CA8MVU1 366 aaPredicted RBP20.53■□□□□ 0.88
VPS29-206ENST00000549578 ZW10O43264 779 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 DUX1O43812 170 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 KERAO60938 352 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 KCNK5O95279 499 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 FTH1P19P0C7X4 201 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 NCF1P14598 390 aaPredicted RBP20.53■□□□□ 0.88
VPS29-206ENST00000549578 CREB1P16220 341 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 POLR2CP19387 275 aaPredicted RBP20.53■□□□□ 0.88
VPS29-206ENST00000549578 SDHBP21912 280 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 IMPA1P29218 277 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 CSF2RBP32927 897 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 CAPZBP47756 277 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 CFHR1Q03591 330 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 SLC18A2Q05940 514 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 ILKQ13418 452 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 FASTKQ14296 549 aaKnown RBP20.53■□□□□ 0.88
VPS29-206ENST00000549578 TGFBIQ15582 683 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 TECRLQ5HYJ1 363 aa20.53■□□□□ 0.88
VPS29-206ENST00000549578 CDHR3Q6ZTQ4 885 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms