RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 FRMD4AQ9P2Q2 1039 aaPredicted RBP3.87□□□□□ -1.79
VPS29-205ENST00000548539 MTUS1Q9ULD2 1270 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 FAF1Q9UNN5 650 aaPredicted RBP3.87□□□□□ -1.79
VPS29-205ENST00000548539 TMED3Q9Y3Q3 217 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 PCDHGB1Q9Y5G3 927 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 ZFP37Q9Y6Q3 630 aaPredicted RBP3.87□□□□□ -1.79
VPS29-205ENST00000548539 PCDH11YQ9BZA8 1340 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 CKAP5Q14008 2032 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 A0A1W2PRB8 838 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 ENO4A6NNW6 628 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 E9PI62 339 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 GAPDHSO14556 408 aaPredicted RBP3.86□□□□□ -1.79
VPS29-205ENST00000548539 CTSVO60911 334 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 PDE9AO76083 593 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 WDPCPO95876 746 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 IGHV2-70P01814 119 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 FAM58BPP0C7Q3 252 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 ZNF23P17027 643 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 CDC25CP30307 473 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 ASCL1P50553 236 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 PRKCZQ05513 592 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 ZNF415Q09FC8 603 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 COASYQ13057 564 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 ITGA7Q13683 1181 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 TUBB2AQ13885 445 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 VEZF1Q14119 521 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 NFE2L1Q14494 772 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 LBHQ53QV2 105 aaPredicted RBP3.86□□□□□ -1.79
VPS29-205ENST00000548539 ELFN2Q5R3F8 820 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 C6orf136Q5SQH8 315 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 FAM91A1Q658Y4 838 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 ZNF324BQ6AW86 544 aaPredicted RBP3.86□□□□□ -1.79
VPS29-205ENST00000548539 ZNF852Q6ZMS4 543 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 ABI3BPQ7Z7G0 1075 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 CUZD1Q86UP6 607 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 NR2C2APQ86WQ0 139 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 MAML2Q8IZL2 1156 aaPredicted RBP3.86□□□□□ -1.79
VPS29-205ENST00000548539 ZNF611Q8N823 705 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 THOC1Q96FV9 657 aaKnown RBP3.86□□□□□ -1.79
VPS29-205ENST00000548539 HES6Q96HZ4 224 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 LRRC3BQ96PB8 259 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 TUBB2BQ9BVA1 445 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 SERINC1Q9NRX5 453 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 ABCF3Q9NUQ8 709 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 JRKLQ9Y4A0 524 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 NME7Q9Y5B8 376 aa3.86□□□□□ -1.79
VPS29-205ENST00000548539 EVPLQ92817 2033 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 HTR3EA5X5Y0 456 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 CAPN9O14815 690 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 PSMA7O14818 248 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 SYNGR3O43761 229 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 ZFYP08048 801 aaPredicted RBP3.85□□□□□ -1.79
VPS29-205ENST00000548539 SUPT20HL2P0C7V6 817 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 HAPLN1P10915 354 aaPredicted RBP3.85□□□□□ -1.79
VPS29-205ENST00000548539 TCEA1P23193 301 aaKnown RBP3.85□□□□□ -1.79
VPS29-205ENST00000548539 ACAT1P24752 427 aaKnown RBP3.85□□□□□ -1.79
VPS29-205ENST00000548539 PTGER4P35408 488 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 PDX1P52945 283 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 DVL1P1P54792 670 aaPredicted RBP3.85□□□□□ -1.79
VPS29-205ENST00000548539 CDH11P55287 796 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 CUL3Q13618 768 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 KEAP1Q14145 624 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 RRS1Q15050 365 aaKnown RBP3.85□□□□□ -1.79
VPS29-205ENST00000548539 E2F5Q15329 346 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 UGP2Q16851 508 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 ZRANB3Q5FWF4 1079 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 NHSL2Q5HYW2 709 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 PDSS1Q5T2R2 415 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 MOXD1Q6UVY6 613 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 ANO5Q75V66 913 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 RBM23Q86U06 439 aaKnown RBP3.85□□□□□ -1.79
VPS29-205ENST00000548539 SNX32Q86XE0 403 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 TMEM139Q8IV31 216 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 GPALPP1Q8IXQ4 340 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 DNAJC22Q8N4W6 341 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 THAP8Q8NA92 274 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 PPFIBP2Q8ND30 876 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 NPEPL1Q8NDH3 523 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 OR11H4Q8NGC9 324 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 OR13A1Q8NGR1 328 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 VANGL1Q8TAA9 524 aaPredicted RBP3.85□□□□□ -1.79
VPS29-205ENST00000548539 GDAP1Q8TB36 358 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.85□□□□□ -1.79
VPS29-205ENST00000548539 HEXDCQ8WVB3 486 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 IRGQQ8WZA9 623 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 NSMAFQ92636 917 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 CORO2AQ92828 525 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 ST6GALNAC6Q969X2 333 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 C17orf77Q96MU5 243 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 MYADMQ96S97 322 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 RAD9AQ99638 391 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 EGFL8Q99944 293 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 PSD2Q9BQI7 771 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 SLC2A11Q9BYW1 496 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 ARRDC1-AS1Q9H2J1 176 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 FN3KQ9H479 309 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 RETREG1Q9H6L5 497 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 DDX31Q9H8H2 851 aaKnown RBP3.85□□□□□ -1.79
VPS29-205ENST00000548539 EVA1AQ9H8M9 152 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 UPF2Q9HAU5 1272 aaKnown RBP3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms