RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 PLEKHS1Q5SXH7 462 aa18.08■□□□□ 0.48
PRPF40B-208ENST00000548436 ELMSAN1Q6PJG2 1045 aa18.08■□□□□ 0.48
PRPF40B-208ENST00000548436 BRAT1Q6PJG6 821 aa18.08■□□□□ 0.48
PRPF40B-208ENST00000548436 DNAJC14Q6Y2X3 702 aaPredicted RBP18.08■□□□□ 0.48
PRPF40B-208ENST00000548436 Q6ZVL8 140 aa18.08■□□□□ 0.48
PRPF40B-208ENST00000548436 BEND7Q8N7W2 519 aaPredicted RBP18.08■□□□□ 0.48
PRPF40B-208ENST00000548436 FRS2Q8WU20 508 aa18.08■□□□□ 0.48
PRPF40B-208ENST00000548436 SELENOMQ8WWX9 145 aa18.08■□□□□ 0.48
PRPF40B-208ENST00000548436 C11orf49Q9H6J7 331 aa18.08■□□□□ 0.48
PRPF40B-208ENST00000548436 IRAK3Q9Y616 596 aa18.08■□□□□ 0.48
PRPF40B-208ENST00000548436 PRAMEF4O60810 478 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 ANXA6P08133 673 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 HIST1H2AGP0C0S8 130 aaPredicted RBP18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 PTPN2P17706 415 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 HIST1H2ADP20671 130 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 DDX6P26196 483 aaKnown RBP eCLIP18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 VIPR1P32241 457 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 RECQLP46063 649 aaPredicted RBP18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 PHC1P78364 1004 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 CYP4F3Q08477 520 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 ZNF77Q15935 545 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 GGTA1PQ4G0N0 100 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 ARSIQ5FYB1 569 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 ZNF648Q5T619 568 aaPredicted RBP18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 PRAMEF9Q5VWM5 478 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 TBPL2Q6SJ96 375 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 TCAIMQ8N3R3 496 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 MRPL43Q8N983 215 aaKnown RBP18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 OR10A6Q8NH74 314 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 VPS50Q96JG6 964 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 HIST1H2AHQ96KK5 128 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 MRGPRX3Q96LB0 322 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 HIST1H2AJQ99878 128 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 HEPHQ9BQS7 1158 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 H2AFJQ9BTM1 129 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 THUMPD3Q9BV44 507 aaKnown RBP18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 FAM83DQ9H4H8 585 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 MTG2Q9H4K7 406 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 SLC6A13Q9NSD5 602 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 ZNF639Q9UID6 485 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 SLC22A14Q9Y267 594 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 WNT6Q9Y6F9 365 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 ARHGEF15O94989 841 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 ZNF30P17039 623 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 NFKBIAP25963 317 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 ETV3P41162 512 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 HNMTP50135 292 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 LBX1P52954 281 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 NTHL1P78549 312 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 DMC1Q14565 340 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 ADRM1Q16186 407 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 GTDC1Q4AE62 458 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 KIAA0907Q7Z7F0 614 aaPredicted RBP18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 PLPP6Q8IY26 295 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 ZNF548Q8NEK5 533 aaPredicted RBP18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 OR2T12Q8NG77 320 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 ITFG1Q8TB96 612 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 OSCP1Q8WVF1 389 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 ZSWIM3Q96MP5 696 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 CCDC115Q96NT0 180 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 OR52E6Q96RD3 313 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 CARS2Q9HA77 564 aaKnown RBP18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 NTN4Q9HB63 628 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 PCDH12Q9NPG4 1184 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 C8orf4Q9NR00 106 aa18.07■□□□□ 0.48
PRPF40B-208ENST00000548436 CLIC3O95833 236 aa18.06■□□□□ 0.48
PRPF40B-208ENST00000548436 CTSLP07711 333 aa18.06■□□□□ 0.48
PRPF40B-208ENST00000548436 C7P10643 843 aa18.06■□□□□ 0.48
PRPF40B-208ENST00000548436 CYP2A6P11509 494 aaPredicted RBP18.06■□□□□ 0.48
PRPF40B-208ENST00000548436 TIMP2P16035 220 aa18.06■□□□□ 0.48
PRPF40B-208ENST00000548436 POLR2EP19388 210 aaKnown RBP18.06■□□□□ 0.48
PRPF40B-208ENST00000548436 RPS14P62263 151 aaKnown RBP18.06■□□□□ 0.48
PRPF40B-208ENST00000548436 LSAMPQ13449 338 aa18.06■□□□□ 0.48
PRPF40B-208ENST00000548436 RUNDC3AQ59EK9 446 aa18.06■□□□□ 0.48
PRPF40B-208ENST00000548436 FAM86B1Q8N7N1 296 aa18.06■□□□□ 0.48
PRPF40B-208ENST00000548436 MAGEE2Q8TD90 523 aaPredicted RBP18.06■□□□□ 0.48
PRPF40B-208ENST00000548436 CYGBQ8WWM9 190 aa18.06■□□□□ 0.48
PRPF40B-208ENST00000548436 ELMO1Q92556 727 aa18.06■□□□□ 0.48
PRPF40B-208ENST00000548436 FIG4Q92562 907 aa18.06■□□□□ 0.48
PRPF40B-208ENST00000548436 FBXL20Q96IG2 436 aa18.06■□□□□ 0.48
PRPF40B-208ENST00000548436 HAUS8Q9BT25 410 aa18.06■□□□□ 0.48
PRPF40B-208ENST00000548436 ELOVL6Q9H5J4 265 aa18.06■□□□□ 0.48
PRPF40B-208ENST00000548436 CLK4Q9HAZ1 481 aaKnown RBP18.06■□□□□ 0.48
PRPF40B-208ENST00000548436 SNX6Q9UNH7 406 aa18.06■□□□□ 0.48
PRPF40B-208ENST00000548436 KIAA0100Q14667 2235 aaKnown RBP18.06■□□□□ 0.48
PRPF40B-208ENST00000548436 FADS2P1A8MWK0 482 aa18.05■□□□□ 0.48
PRPF40B-208ENST00000548436 UPK1AO00322 258 aa18.05■□□□□ 0.48
PRPF40B-208ENST00000548436 CLOCKO15516 846 aa18.05■□□□□ 0.48
PRPF40B-208ENST00000548436 TULP3O75386 442 aa18.05■□□□□ 0.48
PRPF40B-208ENST00000548436 ZNF23P17027 643 aa18.05■□□□□ 0.48
PRPF40B-208ENST00000548436 ITPKAP23677 461 aa18.05■□□□□ 0.48
PRPF40B-208ENST00000548436 TACR1P25103 407 aa18.05■□□□□ 0.48
PRPF40B-208ENST00000548436 RPS9P46781 194 aaKnown RBP18.05■□□□□ 0.48
PRPF40B-208ENST00000548436 CDH15P55291 814 aa18.05■□□□□ 0.48
PRPF40B-208ENST00000548436 ARHGAP15Q53QZ3 475 aa18.05■□□□□ 0.48
PRPF40B-208ENST00000548436 TRIML2Q8N7C3 387 aa18.05■□□□□ 0.48
PRPF40B-208ENST00000548436 L3MBTL4Q8NA19 623 aa18.05■□□□□ 0.48
PRPF40B-208ENST00000548436 BDH2Q9BUT1 245 aa18.05■□□□□ 0.48
PRPF40B-208ENST00000548436 ATG10Q9H0Y0 220 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms