RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 SLC13A3Q8WWT9 602 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 VAPAQ9P0L0 249 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 TRANK1O15050 2925 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 MYOCOSA0A1B0GUC4 107 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 TSPAN11A1L157 253 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 DYTNA2CJ06 578 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 SOBPA7XYQ1 873 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 SOCS2O14508 198 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 CLGNO14967 610 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 BCKDHAP12694 445 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 SLC6A12P48065 614 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 LBX1P52954 281 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 MAD2L1Q13257 205 aaPredicted RBP15.92■□□□□ 0.14
COL4A1-204ENST00000543140 GRM2Q14416 872 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 CDKL4Q5MAI5 379 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 IYDQ6PHW0 289 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 TECPR1Q7Z6L1 1165 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 PTRH1Q86Y79 214 aaKnown RBP15.92■□□□□ 0.14
COL4A1-204ENST00000543140 SLC22A15Q8IZD6 547 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 CHCHD4Q8N4Q1 142 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 DDHD1Q8NEL9 900 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 PHOSPHO2Q8TCD6 241 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 OSCP1Q8WVF1 389 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 SEPHS2Q99611 448 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 SLC29A3Q9BZD2 475 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 RPF2Q9H7B2 306 aaKnown RBP15.92■□□□□ 0.14
COL4A1-204ENST00000543140 TMEM45AQ9NWC5 275 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 CNOT11Q9UKZ1 510 aaKnown RBP15.92■□□□□ 0.14
COL4A1-204ENST00000543140 DLGAP4Q9Y2H0 992 aa15.92■□□□□ 0.14
COL4A1-204ENST00000543140 LRRK1Q38SD2 2015 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 PDLIM1O00151 329 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 ARNTLO00327 626 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 KPNA5O15131 536 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 ADH1CP00326 375 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 NPPAP01160 153 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 FTH1P02794 183 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 CA3P07451 260 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 HRH2P25021 359 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 GRIA2P42262 883 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 HALP42357 657 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 HSPA13P48723 471 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 HNMTP50135 292 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 SYTL3Q4VX76 610 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 TRIM74Q86UV6 250 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 TCAIMQ8N3R3 496 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 GLYATL1Q969I3 302 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 ZDHHC4Q9NPG8 344 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 NUP214P35658 2090 aaPredicted RBP15.91■□□□□ 0.14
COL4A1-204ENST00000543140 MYO9BQ13459 2157 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 HNRNPRO43390 633 aaKnown RBP15.91■□□□□ 0.14
COL4A1-204ENST00000543140 KCNH1O95259 989 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 SRPRAP08240 638 aaKnown RBP15.91■□□□□ 0.14
COL4A1-204ENST00000543140 BMP2P12643 396 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 NFKBIAP25963 317 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 PWP1Q13610 501 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 MAPKAPK3Q16644 382 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 SPATS1Q496A3 300 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 CCSMST1Q4G0I0 132 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 ERAP2Q6P179 960 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 ZNF597Q96LX8 424 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 RWDD3Q9Y3V2 267 aa15.91■□□□□ 0.14
COL4A1-204ENST00000543140 REV3LO60673 3130 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 TCRBV5S2A0A599 114 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 ARHGAP10A1A4S6 786 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 ARHGEF33A8MVX0 844 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 C5orf67F2Z3F1 127 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 SLCO2B1O94956 709 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 PGM3O95394 542 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 PGRP06401 933 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 PIM1P11309 404 aaPredicted RBP15.9■□□□□ 0.14
COL4A1-204ENST00000543140 TCF3P15923 654 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 TMEM115Q12893 351 aaPredicted RBP15.9■□□□□ 0.14
COL4A1-204ENST00000543140 FNDC3BQ53EP0 1204 aaKnown RBP15.9■□□□□ 0.14
COL4A1-204ENST00000543140 USP39Q53GS9 565 aaKnown RBP15.9■□□□□ 0.14
COL4A1-204ENST00000543140 EEF1AKMT2Q5JPI9 291 aaKnown RBP15.9■□□□□ 0.14
COL4A1-204ENST00000543140 FAM78AQ5JUQ0 283 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 NAIF1Q69YI7 327 aaPredicted RBP15.9■□□□□ 0.14
COL4A1-204ENST00000543140 PIP4K2CQ8TBX8 421 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 GTF2H4Q92759 462 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 TMEM159Q96B96 161 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 BIRC7Q96CA5 298 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 TSSK3Q96PN8 268 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 AGPAT4Q9NRZ5 378 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 DNAJC11Q9NVH1 559 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 DKK3Q9UBP4 350 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.9■□□□□ 0.14
COL4A1-204ENST00000543140 SNX6Q9UNH7 406 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 NEUROG3Q9Y4Z2 214 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 UNC80Q8N2C7 3258 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 KCNE1BA0A087WTH5 132 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 ANTXRLA6NF34 631 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 FASP25445 335 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 MAP4P27816 1152 aaKnown RBP15.9■□□□□ 0.14
COL4A1-204ENST00000543140 PEX19P40855 299 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 PFN3P60673 137 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 MYBPC1Q00872 1141 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 CHIT1Q13231 466 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 SP140Q13342 867 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 GLYATQ6IB77 296 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 CBR4Q8N4T8 237 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms