RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 KPNB1Q14974 876 aaKnown RBP11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 C6orf136Q5SQH8 315 aa11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 TPRG1LQ5T0D9 272 aa11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 TBC1D3GQ6DHY5 549 aa11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 TBC1D3CQ6IPX1 549 aa11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 OGFOD2Q6N063 350 aa11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 AGTRAPQ6RW13 159 aa11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 TRMT11Q7Z4G4 463 aaKnown RBP11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 RETREG3Q86VR2 466 aa11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 HORMAD1Q86X24 394 aa11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 MYLK4Q86YV6 388 aaPredicted RBP11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 SCUBE1Q8IWY4 988 aa11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 TBC1D3Q8IZP1 549 aaPredicted RBP11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 PHC3Q8NDX5 983 aa11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 HM13Q8TCT9 377 aa11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 KCNV2Q8TDN2 545 aa11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 MTFMTQ96DP5 389 aaKnown RBP11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 MRPL40Q9NQ50 206 aaKnown RBP11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 DNAJC11Q9NVH1 559 aa11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 AIG1Q9NVV5 245 aa11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 NKX1-2Q9UD57 310 aaPredicted RBP11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 EBF1Q9UH73 591 aa11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 PLAGL1Q9UM63 463 aa11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 PSMD13Q9UNM6 376 aa11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 GPR34Q9UPC5 381 aa11.94□□□□□ -0.5
AP003559.1-201ENST00000540906 GIPC1O14908 333 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 EBLN1P0CF75 366 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 IL9P15248 144 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 CAPN3P20807 821 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 IL12AP29459 219 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 HMOX2P30519 316 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 NEK2P51955 445 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 YBX1P67809 324 aaKnown RBP11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 SMAD2Q15796 467 aaKnown RBP11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 CPSF6Q16630 551 aaKnown RBP eCLIP11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 KIF19Q2TAC6 998 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 DNAL1Q4LDG9 190 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 REP15Q6BDI9 236 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 ADNP2Q6IQ32 1131 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 KIAA1161Q6NSJ0 714 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 DUS1LQ6P1R4 473 aaKnown RBP11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 PGM2L1Q6PCE3 622 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 THOC6Q86W42 341 aaKnown RBP11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 DSELQ8IZU8 1212 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 TCAIMQ8N3R3 496 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 OXR1Q8N573 874 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 ZNF480Q8WV37 535 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 HLA-CQ95604 372 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 IL17FQ96PD4 163 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 WDR26Q9H7D7 661 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 SLC52A3Q9NQ40 469 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 CFAP20Q9Y6A4 193 aaKnown RBP11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 C17orf113A0A1B0GUU1 675 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 E7EQ34 232 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 H0Y8X5 98 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 RSL1D1O76021 490 aaKnown RBP11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 CHEK2O96017 543 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 PDYNP01213 254 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 CATP04040 527 aaKnown RBP11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 CEACAM5P06731 702 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 C7P10643 843 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 MAP4P27816 1152 aaKnown RBP11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 HNMTP50135 292 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 UFM1P61960 85 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 TBL3Q12788 808 aaKnown RBP11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 RIPK1Q13546 671 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 TTC31Q49AM3 519 aaPredicted RBP11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 RFTN2Q52LD8 501 aaPredicted RBP11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 METTL2BQ6P1Q9 378 aaKnown RBP11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 RIPOR1Q6ZS17 1223 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 EFL1Q7Z2Z2 1120 aaKnown RBP11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 LRRTM4Q86VH4 590 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 ZNF687Q8N1G0 1237 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 PLCD3Q8N3E9 789 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 OR5AR1Q8NGP9 310 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 USP7Q93009 1102 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 MED8Q96G25 268 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 MMADHCQ9H3L0 296 aaPredicted RBP11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 ACTL8Q9H568 366 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 ACTR8Q9H981 624 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 EBF2Q9HAK2 575 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 SDR39U1Q9NRG7 319 aaPredicted RBP11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 ZNF490Q9ULM2 529 aaPredicted RBP11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 MMP17Q9ULZ9 603 aa11.93□□□□□ -0.5
AP003559.1-201ENST00000540906 ASPDHA6ND91 283 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 POM121BA6NF01 834 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 NR5A2O00482 541 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 CLDN9O95484 217 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 TEAD1P28347 426 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 TPMTP51580 245 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 SGCGQ13326 291 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 LRP8Q14114 963 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 GAS6Q14393 721 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 NR6A1Q15406 480 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 AMZ2Q86W34 360 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 HPS6Q86YV9 775 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 KLHDC8AQ8IYD2 350 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 LRRC56Q8IYG6 542 aaPredicted RBP11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 RGL4Q8IZJ4 473 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 MIER2Q8N344 545 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms