RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 ACPTQ9BZG2 426 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 CLMPQ9H6B4 373 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 DUS2Q9NX74 493 aaKnown RBP13.44□□□□□ -0.26
RTN3-210ENST00000540798 DPP7Q9UHL4 492 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 MRPS23Q9Y3D9 190 aaKnown RBP13.44□□□□□ -0.26
RTN3-210ENST00000540798 PSMD11O00231 422 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 SPINT1O43278 529 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 AHCYL1O43865 530 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 MTX2O75431 263 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 TIPRLO75663 272 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 GSTM1P09488 218 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 CYP2A7P20853 494 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 HRH2P25021 359 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 MAGEA8P43361 318 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 GSTM4Q03013 218 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 KCNC3Q14003 757 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 GAB4Q2WGN9 574 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 LDLRAP1Q5SW96 308 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 PPP4R4Q6NUP7 873 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 SUSD1Q6UWL2 747 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 LIPIQ6XZB0 460 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 NUDT8Q8WV74 236 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 FBXL8Q96CD0 374 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 TRAPPC9Q96Q05 1148 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 CGREF1Q99674 301 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 C1orf109Q9NX04 203 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 PCDHB3Q9Y5E6 796 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 PSIP1O75475 530 aaKnown RBP13.44□□□□□ -0.26
RTN3-210ENST00000540798 PDYNP01213 254 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 KRT6AP02538 564 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 KRT6BP04259 564 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 HIST1H2AGP0C0S8 130 aaPredicted RBP13.44□□□□□ -0.26
RTN3-210ENST00000540798 UMPSP11172 480 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 ACPPP15309 386 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 HIST1H2ADP20671 130 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 OXTRP30559 389 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 KRT6CP48668 564 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 DGKQP52824 942 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 PTGR1Q14914 329 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 PARS2Q7L3T8 475 aaKnown RBP13.44□□□□□ -0.26
RTN3-210ENST00000540798 PROSER1Q86XN7 944 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 CHERPQ8IWX8 916 aaKnown RBP13.44□□□□□ -0.26
RTN3-210ENST00000540798 ASZ1Q8WWH4 475 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 HIST1H2AHQ96KK5 128 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 HIST1H2AJQ99878 128 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 H2AFJQ9BTM1 129 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 TMEM106CQ9BVX2 250 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 FAM192AQ9GZU8 254 aa13.44□□□□□ -0.26
RTN3-210ENST00000540798 TXNDC9O14530 226 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 PRAMEF4O60810 478 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 ADH1CP00326 375 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 SMIM18P0DKX4 95 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 PSMA4P25789 261 aaKnown RBP13.43□□□□□ -0.26
RTN3-210ENST00000540798 PTCHD3Q3KNS1 767 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 TBCELQ5QJ74 424 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 INTS11Q5TA45 600 aaKnown RBP13.43□□□□□ -0.26
RTN3-210ENST00000540798 RNF220Q5VTB9 566 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 PRAMEF9Q5VWM5 478 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 AMIGO2Q86SJ2 522 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 LIX1Q8N485 282 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 GALNT4Q8N4A0 578 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 PACRGLQ8N7B6 248 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 TRPV3Q8NET8 790 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 SLC13A3Q8WWT9 602 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 ELMO1Q92556 727 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 GTF2H4Q92759 462 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 FCRL1Q96LA6 429 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 MAGEB10Q96LZ2 347 aaPredicted RBP13.43□□□□□ -0.26
RTN3-210ENST00000540798 COQ10AQ96MF6 247 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 HHIPQ96QV1 700 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 SLC29A1Q99808 456 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 ACTR8Q9H981 624 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 TCF20Q9UGU0 1960 aaKnown RBP13.43□□□□□ -0.26
RTN3-210ENST00000540798 H0Y858 1186 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 PER2O15055 1255 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 IL6P05231 212 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 PRLHRP49683 370 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 PFN3P60673 137 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 TXNL4AP83876 142 aaKnown RBP13.43□□□□□ -0.26
RTN3-210ENST00000540798 PRKCQQ04759 706 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 PCDH1Q08174 1060 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 SELPLGQ14242 412 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 C6orf52Q5T4I8 152 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 CACHD1Q5VU97 1274 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 ST13P4Q8IZP2 240 aaPredicted RBP13.43□□□□□ -0.26
RTN3-210ENST00000540798 GLYATL1Q969I3 302 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 PCDHGB4Q9UN71 923 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 PCDHGB5Q9Y5G0 923 aa13.43□□□□□ -0.26
RTN3-210ENST00000540798 SLC5A10A0PJK1 596 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 TULP3O75386 442 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 MTHFD1P11586 935 aaKnown RBP13.42□□□□□ -0.26
RTN3-210ENST00000540798 PCSK2P16519 638 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 IL10P22301 178 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 GRIA2P42262 883 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 AASDHQ4L235 1098 aaPredicted RBP13.42□□□□□ -0.26
RTN3-210ENST00000540798 NLRP8Q86W28 1048 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 RASGEF1AQ8N9B8 481 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 MCOLN3Q8TDD5 553 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 GLMNQ92990 594 aa13.42□□□□□ -0.26
RTN3-210ENST00000540798 CCDC115Q96NT0 180 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms