RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 EIF3LQ9Y262 564 aaKnown RBP16.51■□□□□ 0.23
USP28-208ENST00000540438 CCL27Q9Y4X3 112 aa16.51■□□□□ 0.23
USP28-208ENST00000540438 E2F6O75461 281 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 KCNH1O95259 989 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 TYRP14679 529 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 BDKRB1P46663 353 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 CTSCP53634 463 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 WDR5P61964 334 aaKnown RBP16.5■□□□□ 0.23
USP28-208ENST00000540438 TXNL4AP83876 142 aaKnown RBP16.5■□□□□ 0.23
USP28-208ENST00000540438 PMS2P3Q13401 168 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 PCBP2Q15366 365 aaKnown RBP eCLIP16.5■□□□□ 0.23
USP28-208ENST00000540438 PDCD4Q53EL6 469 aaKnown RBP16.5■□□□□ 0.23
USP28-208ENST00000540438 CYBRD1Q53TN4 286 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 TCEAL5Q5H9L2 206 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 C12orf76Q8N812 135 aaPredicted RBP16.5■□□□□ 0.23
USP28-208ENST00000540438 ZUFSPQ96AP4 578 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 SH3GL3Q99963 347 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 RBM38Q9H0Z9 239 aaKnown RBP16.5■□□□□ 0.23
USP28-208ENST00000540438 CLK4Q9HAZ1 481 aaKnown RBP16.5■□□□□ 0.23
USP28-208ENST00000540438 PRDM8Q9NQV8 689 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 PNPLA3Q9NST1 481 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 DNMT3BQ9UBC3 853 aaKnown RBP16.5■□□□□ 0.23
USP28-208ENST00000540438 OARD1Q9Y530 152 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 PCDHB1Q9Y5F3 818 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 NOTCH4Q99466 2003 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 NINQ8N4C6 2090 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 TRIM43BA6NCK2 446 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 MYO1GB0I1T2 1018 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 hCG_2039718K7EN88 272 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 CST1P01037 141 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 PIGAP37287 484 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 NR1H2P55055 460 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 TPD52P55327 224 aaPredicted RBP16.5■□□□□ 0.23
USP28-208ENST00000540438 CYP4F3Q08477 520 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 BNIP2Q12982 314 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 B3GNT6Q6ZMB0 384 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 CLECL1Q8IZS7 167 aa16.5■□□□□ 0.23
USP28-208ENST00000540438 TRIM43Q96BQ3 446 aaPredicted RBP16.5■□□□□ 0.23
USP28-208ENST00000540438 TRAV19A0A0A6YYK7 116 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 MAGEB3O15480 346 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 RGS14O43566 566 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 VPS4BO75351 444 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 EFEMP2O95967 443 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 CXCL10P02778 98 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 ANXA5P08758 320 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 FSHRP23945 695 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 HSPA13P48723 471 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 SNRPD1P62314 119 aaKnown RBP16.49■□□□□ 0.23
USP28-208ENST00000540438 LRRC26Q2I0M4 334 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 PRMT9Q6P2P2 845 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 CERS6Q6ZMG9 384 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 TMEM26Q6ZUK4 368 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 DDX53Q86TM3 631 aaKnown RBP16.49■□□□□ 0.23
USP28-208ENST00000540438 ZBTB18Q99592 522 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 TMEM121BQ9BXQ6 578 aaPredicted RBP16.49■□□□□ 0.23
USP28-208ENST00000540438 PPT2Q9UMR5 302 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 ERVK-11Q9UQG0 969 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 TNPO3Q9Y5L0 923 aaKnown RBP16.49■□□□□ 0.23
USP28-208ENST00000540438 AGXTP21549 392 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 VAC14Q08AM6 782 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 CHIT1Q13231 466 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 ATP6AP1Q15904 470 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 PABPC1LQ4VXU2 614 aaKnown RBP16.49■□□□□ 0.23
USP28-208ENST00000540438 MPPE1Q53F39 396 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 AP1ARQ63HQ0 302 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 OVCA2Q8WZ82 227 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 SCRN2Q96FV2 425 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 TRMT2BQ96GJ1 504 aaKnown RBP16.49■□□□□ 0.23
USP28-208ENST00000540438 SAMD11Q96NU1 681 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 ACAT2Q9BWD1 397 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 SMPD3Q9NY59 655 aaPredicted RBP16.49■□□□□ 0.23
USP28-208ENST00000540438 ZIM2Q9NZV7 527 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 COMMD3-BMI1R4GMX3 469 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 GBF1Q92538 1859 aa16.49■□□□□ 0.23
USP28-208ENST00000540438 SMIM31A0A1B0GVY4 71 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 GMNNO75496 209 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 CLDN9O95484 217 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 SERPINA1P01009 418 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 IRS1P35568 1242 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 DGKEP52429 567 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 CHRNB3Q05901 458 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 BIRC2Q13490 618 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 MEP1AQ16819 746 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 DOK6Q6PKX4 331 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 ZNF621Q6ZSS3 439 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 TPRG1Q6ZUI0 275 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 ZNF551Q7Z340 670 aaPredicted RBP16.48■□□□□ 0.23
USP28-208ENST00000540438 TMC8Q8IU68 726 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 C9orf16Q9BUW7 83 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 ANKRD60Q9BZ19 345 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 CCDC90BQ9GZT6 254 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 ING2Q9H160 280 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 VCX3AQ9NNX9 186 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 ASAH2Q9NR71 780 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 KPNA3O00505 521 aaPredicted RBP16.48■□□□□ 0.23
USP28-208ENST00000540438 AP1G1O43747 822 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 HS6ST1O60243 411 aa16.48■□□□□ 0.23
USP28-208ENST00000540438 ENO2P09104 434 aaPredicted RBP16.48■□□□□ 0.23
USP28-208ENST00000540438 HIST1H2AGP0C0S8 130 aaPredicted RBP16.48■□□□□ 0.23
USP28-208ENST00000540438 TFPTP0C1Z6 253 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms