RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 CDC20Q12834 499 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 CTBP1Q13363 440 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 KRT33BQ14525 404 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 DEFB110Q30KQ9 67 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 TAF1BQ53T94 588 aaPredicted RBP10.29□□□□□ -0.76
CD44-227ENST00000528086 DNAJC21Q5F1R6 531 aaKnown RBP10.29□□□□□ -0.76
CD44-227ENST00000528086 EEF1AKMT2Q5JPI9 291 aaKnown RBP10.29□□□□□ -0.76
CD44-227ENST00000528086 AARS2Q5JTZ9 985 aaKnown RBP10.29□□□□□ -0.76
CD44-227ENST00000528086 CNSTQ6PJW8 725 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 DNAJC22Q8N4W6 341 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 CFAP61Q8NHU2 1237 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 ASZ1Q8WWH4 475 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 STARD8Q92502 1023 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 ZNF669Q96BR6 464 aaPredicted RBP10.29□□□□□ -0.76
CD44-227ENST00000528086 MED8Q96G25 268 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 CAPZA3Q96KX2 299 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 FCRL4Q96PJ5 515 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 TRIM51Q9BSJ1 452 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 SPRTNQ9H040 489 aaPredicted RBP10.29□□□□□ -0.76
CD44-227ENST00000528086 FBXO6Q9NRD1 293 aaPredicted RBP10.29□□□□□ -0.76
CD44-227ENST00000528086 KCND1Q9NSA2 647 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 OR6C2Q9NZP2 312 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 SLC17A6Q9P2U8 582 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 LNPEPQ9UIQ6 1025 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 PCDHGA6Q9Y5G7 932 aa10.29□□□□□ -0.76
CD44-227ENST00000528086 PIPSLA2A3N6 862 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 ZNF891A8MT65 544 aaPredicted RBP10.28□□□□□ -0.76
CD44-227ENST00000528086 C2orf74A8MZ97 194 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 TMEM150CB9EJG8 249 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 AP3B1O00203 1094 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 CNOT3O75175 753 aaKnown RBP10.28□□□□□ -0.76
CD44-227ENST00000528086 NDUFS3O75489 264 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 USP1O94782 785 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 HAUS5O94927 633 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 MED26O95402 600 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 TCP1P17987 556 aaKnown RBP10.28□□□□□ -0.76
CD44-227ENST00000528086 ITGAXP20702 1163 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 PSMB5P28074 263 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 SHMT2P34897 504 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 SLC1A2P43004 574 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 FOXL2P58012 376 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 GNG11P61952 73 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 PLOD1Q02809 727 aaPredicted RBP10.28□□□□□ -0.76
CD44-227ENST00000528086 DHX9Q08211 1270 aaKnown RBP10.28□□□□□ -0.76
CD44-227ENST00000528086 DNASE1L3Q13609 305 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 IL10RAQ13651 578 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 DHX34Q14147 1143 aaKnown RBP10.28□□□□□ -0.76
CD44-227ENST00000528086 FASTKQ14296 549 aaKnown RBP10.28□□□□□ -0.76
CD44-227ENST00000528086 SYTL3Q4VX76 610 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 ARMC3Q5W041 872 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 FCRL6Q6DN72 434 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 ZNF470Q6ECI4 717 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 PTRHD1Q6GMV3 140 aaKnown RBP10.28□□□□□ -0.76
CD44-227ENST00000528086 ARMC6Q6NXE6 501 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 FAM198BQ6UWH4 519 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 UNC5DQ6UXZ4 953 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 CYHR1Q6ZMK1 362 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 TAX1BP1Q86VP1 789 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 LRRC6Q86X45 466 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 PPIL6Q8IXY8 311 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 DSELQ8IZU8 1212 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 DTWD1Q8N5C7 304 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 C19orf47Q8N9M1 422 aaKnown RBP10.28□□□□□ -0.76
CD44-227ENST00000528086 DLG3Q92796 817 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 TCF12Q99081 682 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 NAP1L3Q99457 506 aaPredicted RBP10.28□□□□□ -0.76
CD44-227ENST00000528086 CHRNA10Q9GZZ6 450 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 CHST8Q9H2A9 424 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 XAB2Q9HCS7 855 aaKnown RBP10.28□□□□□ -0.76
CD44-227ENST00000528086 PDE7BQ9NP56 450 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 STARD5Q9NSY2 213 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 PCMTD2Q9NV79 361 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 POLG2Q9UHN1 485 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 GNPTGQ9UJJ9 305 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 TSR3Q9UJK0 312 aaKnown RBP10.28□□□□□ -0.76
CD44-227ENST00000528086 PADI1Q9ULC6 663 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.28□□□□□ -0.76
CD44-227ENST00000528086 FAM169AQ9Y6X4 670 aa10.28□□□□□ -0.76
CD44-227ENST00000528086 ARHGEF33A8MVX0 844 aa10.27□□□□□ -0.77
CD44-227ENST00000528086 MATN2O00339 956 aa10.27□□□□□ -0.77
CD44-227ENST00000528086 TTI1O43156 1089 aa10.27□□□□□ -0.77
CD44-227ENST00000528086 SCRG1O75711 98 aa10.27□□□□□ -0.77
CD44-227ENST00000528086 ESR1P03372 595 aa10.27□□□□□ -0.77
CD44-227ENST00000528086 APOA4P06727 396 aa10.27□□□□□ -0.77
CD44-227ENST00000528086 ERGP11308 486 aa10.27□□□□□ -0.77
CD44-227ENST00000528086 PLA2G2AP14555 144 aa10.27□□□□□ -0.77
CD44-227ENST00000528086 PKMP14618 531 aaKnown RBP10.27□□□□□ -0.77
CD44-227ENST00000528086 MAGP20916 626 aa10.27□□□□□ -0.77
CD44-227ENST00000528086 CD9P21926 228 aa10.27□□□□□ -0.77
CD44-227ENST00000528086 RAB28P51157 221 aa10.27□□□□□ -0.77
CD44-227ENST00000528086 SNRPNP63162 240 aaKnown RBP10.27□□□□□ -0.77
CD44-227ENST00000528086 PRKAA1Q13131 559 aa10.27□□□□□ -0.77
CD44-227ENST00000528086 SLC5A12Q1EHB4 618 aa10.27□□□□□ -0.77
CD44-227ENST00000528086 ZXDCQ2QGD7 858 aaPredicted RBP10.27□□□□□ -0.77
CD44-227ENST00000528086 CRTC2Q53ET0 693 aaPredicted RBP10.27□□□□□ -0.77
CD44-227ENST00000528086 HSP90AA5PQ58FG0 334 aa10.27□□□□□ -0.77
CD44-227ENST00000528086 HP1BP3Q5SSJ5 553 aaPredicted RBP10.27□□□□□ -0.77
CD44-227ENST00000528086 IZUMO3Q5VZ72 239 aa10.27□□□□□ -0.77
CD44-227ENST00000528086 CASC4Q6P4E1 433 aa10.27□□□□□ -0.77
CD44-227ENST00000528086 TRMT10BQ6PF06 316 aaKnown RBP10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms