RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 ABCB8Q9NUT2 735 aa4.14□□□□□ -1.75
CD44-226ENST00000527889 QPCTLQ9NXS2 382 aa4.14□□□□□ -1.75
CD44-226ENST00000527889 EURLQ9NYK6 297 aa4.14□□□□□ -1.75
CD44-226ENST00000527889 BFARQ9NZS9 450 aa4.14□□□□□ -1.75
CD44-226ENST00000527889 PSMC3IPQ9P2W1 217 aaPredicted RBP4.14□□□□□ -1.75
CD44-226ENST00000527889 LHX3Q9UBR4 397 aa4.14□□□□□ -1.75
CD44-226ENST00000527889 LGALS13Q9UHV8 139 aa4.14□□□□□ -1.75
CD44-226ENST00000527889 INTS6Q9UL03 887 aaKnown RBP4.14□□□□□ -1.75
CD44-226ENST00000527889 TBC1D30Q9Y2I9 924 aa4.14□□□□□ -1.75
CD44-226ENST00000527889 ANGPTL3Q9Y5C1 460 aa4.14□□□□□ -1.75
CD44-226ENST00000527889 OR51B4Q9Y5P0 310 aa4.14□□□□□ -1.75
CD44-226ENST00000527889 FAM186AA6NE01 2351 aa4.14□□□□□ -1.75
CD44-226ENST00000527889 ABCA12Q86UK0 2595 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 ASCC3Q8N3C0 2202 aaKnown RBP4.13□□□□□ -1.75
CD44-226ENST00000527889 DMXL1Q9Y485 3027 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 FAM237BA0A1B0GVD1 139 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 FAM159BA6NKW6 160 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 HEPACAM2A8MVW5 462 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 GOLGA8TH3BQL2 631 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 K7ERQ8 282 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 F2RL2O00254 374 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 CCL22O00626 93 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 TRIM38O00635 465 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 CDH16O75309 829 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 TBX10O75333 385 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 SPAG7O75391 227 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 SPAG6O75602 509 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 FSBPO95073 299 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 STAMBPO95630 424 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 SLC4A1P02730 911 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 C1QAP02745 245 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 AHSGP02765 367 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 MT-ND5P03915 603 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 ANXA2P07355 339 aaKnown RBP4.13□□□□□ -1.75
CD44-226ENST00000527889 INHBAP08476 426 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 SERPINF2P08697 491 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 ATXN1LP0C7T5 689 aaKnown RBP4.13□□□□□ -1.75
CD44-226ENST00000527889 PIRTP0C851 137 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 ERVK-10P10266 1014 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 HNRNPLP14866 589 aaKnown RBP eCLIP4.13□□□□□ -1.75
CD44-226ENST00000527889 CR2P20023 1033 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 DDCP20711 480 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 PRKCHP24723 683 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 HLA-FP30511 346 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 STX2P32856 288 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 HOXD12P35452 270 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 MSH2P43246 934 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 ABCG1P45844 678 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 GLRBP48167 497 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 NPY2RP49146 381 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 SOX8P57073 446 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 RHOAP61586 193 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 KDSRQ06136 332 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 DLX2Q07687 328 aaPredicted RBP4.13□□□□□ -1.75
CD44-226ENST00000527889 NSUN2Q08J23 767 aaKnown RBP eCLIP4.13□□□□□ -1.75
CD44-226ENST00000527889 LRRC74AQ0VAA2 488 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 CDH17Q12864 832 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 TCF15Q12870 199 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 TRAF2Q12933 501 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 BMPR2Q13873 1038 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 SLC1A5Q15758 541 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 KLHL38Q2WGJ6 581 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 PLEKHN1Q494U1 663 aaPredicted RBP4.13□□□□□ -1.75
CD44-226ENST00000527889 FUT11Q495W5 492 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 ANKRD20A4Q4UJ75 823 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 TNFAIP8L3Q5GJ75 292 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 FAM78AQ5JUQ0 283 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 SIRPB2Q5JXA9 342 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 SPANXN3Q5MJ09 141 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 EMC10Q5UCC4 262 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 TMEM200BQ69YZ2 307 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 GRAMD4Q6IC98 578 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 TANGO2Q6ICL3 276 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 ANKRD54Q6NXT1 300 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 CRTC1Q6UUV9 634 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 RANBP10Q6VN20 620 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 ZNF783Q6ZMS7 281 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 KDM7AQ6ZMT4 941 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 GALNT5Q7Z7M9 940 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 GPR149Q86SP6 731 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 CROCCP2Q86T23 111 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 LINC00523Q86TU6 105 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 TRABD2AQ86V40 505 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 EXOC3L1Q86VI1 746 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 SRRM1Q8IYB3 904 aaKnown RBP4.13□□□□□ -1.75
CD44-226ENST00000527889 C4orf33Q8N1A6 199 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 PQLC1Q8N2U9 271 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 BBS5Q8N3I7 341 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 GALNT15Q8N3T1 639 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 DCAF4L2Q8NA75 395 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 OR6K2Q8NGY2 324 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 FIBINQ8TAL6 211 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 MDM1Q8TC05 714 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 SUN5Q8TC36 379 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 PDCD6IPQ8WUM4 868 aaKnown RBP4.13□□□□□ -1.75
CD44-226ENST00000527889 ZNF480Q8WV37 535 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 SLC44A1Q8WWI5 657 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 HDAC2Q92769 488 aaKnown RBP4.13□□□□□ -1.75
CD44-226ENST00000527889 FGF13Q92913 245 aa4.13□□□□□ -1.75
CD44-226ENST00000527889 SMARCD2Q92925 531 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms