RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 COMMD10Q9Y6G5 202 aa9.87□□□□□ -0.83
VPS28-204ENST00000526054 OR52A4PA6NMU1 304 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 E5RI56 91 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 SPAG6O75602 509 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 UBXN7O94888 489 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 DLGAP3O95886 979 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 MTHFD1P11586 935 aaKnown RBP9.86□□□□□ -0.83
VPS28-204ENST00000526054 BRAFP15056 766 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 OAS2P29728 719 aaKnown RBP9.86□□□□□ -0.83
VPS28-204ENST00000526054 STAT5AP42229 794 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 MAGEA4P43358 317 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 PREPP48147 710 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 LEPRP48357 1165 aaKnown RBP9.86□□□□□ -0.83
VPS28-204ENST00000526054 CD151P48509 253 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 CARSP49589 748 aaKnown RBP9.86□□□□□ -0.83
VPS28-204ENST00000526054 MC1RQ01726 317 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 MAP7Q14244 749 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 RPE65Q16518 533 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 ZNF658BQ4V348 819 aaPredicted RBP9.86□□□□□ -0.83
VPS28-204ENST00000526054 CTSL3PQ5NE16 218 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 TRMT10BQ6PF06 316 aaKnown RBP9.86□□□□□ -0.83
VPS28-204ENST00000526054 CAPN12Q6ZSI9 719 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 TMEM26Q6ZUK4 368 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 OTOAQ7RTW8 1153 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 TIPARPQ7Z3E1 657 aaKnown RBP9.86□□□□□ -0.83
VPS28-204ENST00000526054 GALNT7Q86SF2 657 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 KRT222Q8N1A0 295 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 LILRA3Q8N6C8 439 aaPredicted RBP9.86□□□□□ -0.83
VPS28-204ENST00000526054 C2CD4AQ8NCU7 369 aaPredicted RBP9.86□□□□□ -0.83
VPS28-204ENST00000526054 LKAAEAR1Q8TD35 194 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 ASZ1Q8WWH4 475 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 CDKL2Q92772 493 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 C9orf72Q96LT7 481 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 RMDN2Q96LZ7 410 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 C12orf66Q96MD2 445 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 BIRC8Q96P09 236 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 TGM7Q96PF1 710 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 SPRY4Q9C004 299 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 UCK1Q9HA47 277 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 PLAC1Q9HBJ0 212 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 IMP3Q9NV31 184 aaKnown RBP9.86□□□□□ -0.83
VPS28-204ENST00000526054 NSMCE4AQ9NXX6 385 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 ZNF624Q9P2J8 865 aaPredicted RBP9.86□□□□□ -0.83
VPS28-204ENST00000526054 WDR37Q9Y2I8 494 aa9.86□□□□□ -0.83
VPS28-204ENST00000526054 RELNP78509 3460 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 SLC5A10A0PJK1 596 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 IQCF5A8MTL0 148 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 NIPSNAP2O75323 286 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 RASSF9O75901 435 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 C9P02748 559 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 TYRP1P17643 537 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 AMD1P17707 334 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 TCN2P20062 427 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 CHRM3P20309 590 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 NDUFS1P28331 727 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 SSTR1P30872 391 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 CCR7P32248 378 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 STX2P32856 288 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 CASRP41180 1078 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 SLC19A1P41440 591 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 CAPZBP47756 277 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 SEPHS1P49903 392 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 CSE1LP55060 971 aaKnown RBP9.85□□□□□ -0.83
VPS28-204ENST00000526054 HSPA14Q0VDF9 509 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 ILF2Q12905 390 aaKnown RBP9.85□□□□□ -0.83
VPS28-204ENST00000526054 KRT33BQ14525 404 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 BRD3Q15059 726 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 DEFB109BQ30KR1 87 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 TTLL9Q3SXZ7 439 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 ZNF789Q5FWF6 425 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 PLEKHS1Q5SXH7 462 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 TEDDM1Q5T9Z0 273 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 ATP1A1-AS1Q5TC04 95 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 C16orf46Q6P387 395 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 SLC26A11Q86WA9 606 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 LRRN4CLQ8ND94 238 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 MYRIPQ8NFW9 859 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 APOBEC4Q8WW27 367 aaKnown RBP9.85□□□□□ -0.83
VPS28-204ENST00000526054 UBXN4Q92575 508 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 KCNJ9Q92806 393 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 RNF31Q96EP0 1072 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 INSM2Q96T92 566 aaPredicted RBP9.85□□□□□ -0.83
VPS28-204ENST00000526054 OR52A5Q9H2C5 316 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 ZNF768Q9H5H4 540 aaKnown RBP9.85□□□□□ -0.83
VPS28-204ENST00000526054 ZNF71Q9NQZ8 489 aaPredicted RBP9.85□□□□□ -0.83
VPS28-204ENST00000526054 MOCS1Q9NZB8 636 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 OGFRQ9NZT2 677 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 ANAPC2Q9UJX6 822 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 CORO1CQ9ULV4 474 aaPredicted RBP9.85□□□□□ -0.83
VPS28-204ENST00000526054 COLEC10Q9Y6Z7 277 aa9.85□□□□□ -0.83
VPS28-204ENST00000526054 SPENQ96T58 3664 aaKnown RBP9.84□□□□□ -0.83
VPS28-204ENST00000526054 TCRBV9S1A1TA0A576 114 aa9.84□□□□□ -0.83
VPS28-204ENST00000526054 TOX3O15405 576 aaPredicted RBP9.84□□□□□ -0.83
VPS28-204ENST00000526054 VPS26AO75436 327 aa9.84□□□□□ -0.83
VPS28-204ENST00000526054 GPC4O75487 556 aa9.84□□□□□ -0.83
VPS28-204ENST00000526054 F7P08709 466 aaPredicted RBP9.84□□□□□ -0.83
VPS28-204ENST00000526054 ZNF28P17035 718 aa9.84□□□□□ -0.83
VPS28-204ENST00000526054 AOAHP28039 575 aa9.84□□□□□ -0.83
VPS28-204ENST00000526054 PDHA2P29803 388 aa9.84□□□□□ -0.83
VPS28-204ENST00000526054 PHBP35232 272 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms