RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 CCDC110Q8TBZ0 833 aa6.34□□□□□ -1.39
CD44-221ENST00000526000 ELMO1Q92556 727 aa6.34□□□□□ -1.39
CD44-221ENST00000526000 TRIM44Q96DX7 344 aaPredicted RBP6.34□□□□□ -1.39
CD44-221ENST00000526000 DNAJC1Q96KC8 554 aaKnown RBP6.34□□□□□ -1.39
CD44-221ENST00000526000 LINC00615Q96LM1 132 aaPredicted RBP6.34□□□□□ -1.39
CD44-221ENST00000526000 MAGEB10Q96LZ2 347 aaPredicted RBP6.34□□□□□ -1.39
CD44-221ENST00000526000 IL17FQ96PD4 163 aa6.34□□□□□ -1.39
CD44-221ENST00000526000 ALS2CR12Q96Q35 445 aa6.34□□□□□ -1.39
CD44-221ENST00000526000 OR2A14Q96R47 310 aa6.34□□□□□ -1.39
CD44-221ENST00000526000 NDC1Q9BTX1 674 aa6.34□□□□□ -1.39
CD44-221ENST00000526000 TFB2MQ9H5Q4 396 aaKnown RBP6.34□□□□□ -1.39
CD44-221ENST00000526000 MVB12BQ9H7P6 319 aa6.34□□□□□ -1.39
CD44-221ENST00000526000 SLC6A20Q9NP91 592 aa6.34□□□□□ -1.39
CD44-221ENST00000526000 AGPAT4Q9NRZ5 378 aa6.34□□□□□ -1.39
CD44-221ENST00000526000 SLC22A11Q9NSA0 550 aa6.34□□□□□ -1.39
CD44-221ENST00000526000 ZDHHC3Q9NYG2 299 aa6.34□□□□□ -1.39
CD44-221ENST00000526000 PLA2G3Q9NZ20 509 aa6.34□□□□□ -1.39
CD44-221ENST00000526000 SH3BGRL2Q9UJC5 107 aa6.34□□□□□ -1.39
CD44-221ENST00000526000 CDC23Q9UJX2 597 aa6.34□□□□□ -1.39
CD44-221ENST00000526000 FBXL4Q9UKA2 621 aa6.34□□□□□ -1.39
CD44-221ENST00000526000 ASF1AQ9Y294 204 aa6.34□□□□□ -1.39
CD44-221ENST00000526000 PPP2R2CQ9Y2T4 447 aa6.34□□□□□ -1.39
CD44-221ENST00000526000 PCDHGA10Q9Y5H3 936 aa6.34□□□□□ -1.39
CD44-221ENST00000526000 MAU2Q9Y6X3 613 aa6.34□□□□□ -1.39
CD44-221ENST00000526000 CCDC88CQ9P219 2028 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 SVILO95425 2214 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 hCG_1818297A0A087WSY0 165 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 NBPF19A0A087WUL8 3843 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 C5orf60A6NFR6 353 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 ZNF487B1APH4 448 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 FFAR3O14843 346 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 GPR42O15529 346 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 ZSCAN9O15535 394 aaPredicted RBP6.33□□□□□ -1.4
CD44-221ENST00000526000 KCNN4O15554 427 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 PSTPIP1O43586 416 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 ANXA9O76027 345 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 CRTAMO95727 393 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 TUBB4AP04350 444 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 CTNNA2P26232 953 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 GRNP28799 593 aaKnown RBP6.33□□□□□ -1.4
CD44-221ENST00000526000 ADRA1AP35348 466 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 HADHAP40939 763 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 GABRA4P48169 554 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 EIF3EP60228 445 aaKnown RBP6.33□□□□□ -1.4
CD44-221ENST00000526000 OTUD4Q01804 1114 aaKnown RBP6.33□□□□□ -1.4
CD44-221ENST00000526000 MSLNQ13421 630 aaPredicted RBP6.33□□□□□ -1.4
CD44-221ENST00000526000 BOP1Q14137 746 aaKnown RBP6.33□□□□□ -1.4
CD44-221ENST00000526000 PRPSAP1Q14558 356 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 NAA30Q147X3 362 aaPredicted RBP6.33□□□□□ -1.4
CD44-221ENST00000526000 DBN1Q16643 649 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 ANKRD20A2Q5SQ80 823 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 ANKRD20A1Q5TYW2 823 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 ANKRD20A3Q5VUR7 823 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 DENND5AQ6IQ26 1287 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 RHBDD2Q6NTF9 364 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 ARHGEF18Q6ZSZ5 1173 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 SNX20Q7Z614 316 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 HPS6Q86YV9 775 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 MCATQ8IVS2 390 aaKnown RBP6.33□□□□□ -1.4
CD44-221ENST00000526000 MCEMP1Q8IX19 187 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 PIANPQ8IYJ0 282 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 RCOR2Q8IZ40 523 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 DNAJC22Q8N4W6 341 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 TRIM58Q8NG06 486 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 OR2Y1Q8NGV0 311 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 ACTL9Q8TC94 416 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 DTX3LQ8TDB6 740 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 KRT35Q92764 455 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 ULK4Q96C45 1275 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 THOC3Q96J01 351 aaKnown RBP6.33□□□□□ -1.4
CD44-221ENST00000526000 QKIQ96PU8 341 aaKnown RBP eCLIP6.33□□□□□ -1.4
CD44-221ENST00000526000 TBL1YQ9BQ87 522 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 DHRS4Q9BTZ2 278 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 YIPF2Q9BWQ6 316 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 AP1M1Q9BXS5 423 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 PITPNM3Q9BZ71 974 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 GBA3Q9H227 469 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 KCNF1Q9H3M0 494 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 SYTL2Q9HCH5 934 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 SMOXQ9NWM0 555 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 CAMSAP3Q9P1Y5 1249 aaPredicted RBP6.33□□□□□ -1.4
CD44-221ENST00000526000 TSR3Q9UJK0 312 aaKnown RBP6.33□□□□□ -1.4
CD44-221ENST00000526000 TRHDEQ9UKU6 1024 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 NOVA2Q9UNW9 492 aaKnown RBP6.33□□□□□ -1.4
CD44-221ENST00000526000 PLCL2Q9UPR0 1127 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.33□□□□□ -1.4
CD44-221ENST00000526000 REXO2Q9Y3B8 237 aaKnown RBP6.33□□□□□ -1.4
CD44-221ENST00000526000 AP1M2Q9Y6Q5 423 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 UNC79Q9P2D8 2635 aa6.33□□□□□ -1.4
CD44-221ENST00000526000 A0A0J9YY10 115 aa6.32□□□□□ -1.4
CD44-221ENST00000526000 C17orf113A0A1B0GUU1 675 aa6.32□□□□□ -1.4
CD44-221ENST00000526000 MIF4GDA9UHW6 222 aaKnown RBP6.32□□□□□ -1.4
CD44-221ENST00000526000 BHMG1C9JSJ3 638 aaPredicted RBP6.32□□□□□ -1.4
CD44-221ENST00000526000 H3BMH7 237 aa6.32□□□□□ -1.4
CD44-221ENST00000526000 AGPSO00116 658 aa6.32□□□□□ -1.4
CD44-221ENST00000526000 MATN2O00339 956 aa6.32□□□□□ -1.4
CD44-221ENST00000526000 SOCS6O14544 535 aa6.32□□□□□ -1.4
CD44-221ENST00000526000 HNRNPRO43390 633 aaKnown RBP6.32□□□□□ -1.4
CD44-221ENST00000526000 OR1I1O60431 355 aa6.32□□□□□ -1.4
CD44-221ENST00000526000 WISP2O76076 250 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms