RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 SH3YL1Q96HL8 342 aaPredicted RBP12.9□□□□□ -0.34
TCOF1-213ENST00000514442 CHCHD6Q9BRQ6 235 aa12.9□□□□□ -0.34
TCOF1-213ENST00000514442 ACTR3BQ9P1U1 418 aa12.9□□□□□ -0.34
TCOF1-213ENST00000514442 MKLN1Q9UL63 735 aa12.9□□□□□ -0.34
TCOF1-213ENST00000514442 BAIAP2Q9UQB8 552 aa12.9□□□□□ -0.34
TCOF1-213ENST00000514442 CACNB4O00305 520 aaPredicted RBP12.9□□□□□ -0.34
TCOF1-213ENST00000514442 CCR4P51679 360 aa12.9□□□□□ -0.34
TCOF1-213ENST00000514442 AP1S1P61966 158 aa12.9□□□□□ -0.34
TCOF1-213ENST00000514442 CHERPQ8IWX8 916 aaKnown RBP12.9□□□□□ -0.34
TCOF1-213ENST00000514442 JPH3Q8WXH2 748 aaPredicted RBP12.9□□□□□ -0.34
TCOF1-213ENST00000514442 SLC22A4Q9H015 551 aa12.9□□□□□ -0.34
TCOF1-213ENST00000514442 IPPKQ9H8X2 491 aa12.9□□□□□ -0.34
TCOF1-213ENST00000514442 SGK2Q9HBY8 427 aa12.9□□□□□ -0.34
TCOF1-213ENST00000514442 U3KQV3 271 aa12.9□□□□□ -0.34
TCOF1-213ENST00000514442 I3L521 148 aa12.9□□□□□ -0.35
TCOF1-213ENST00000514442 TNFRSF10AO00220 468 aa12.9□□□□□ -0.35
TCOF1-213ENST00000514442 ATG13O75143 517 aa12.9□□□□□ -0.35
TCOF1-213ENST00000514442 CNMDO75829 334 aa12.9□□□□□ -0.35
TCOF1-213ENST00000514442 POP4O95707 220 aaKnown RBP12.9□□□□□ -0.35
TCOF1-213ENST00000514442 GNRH1P01148 92 aa12.9□□□□□ -0.35
TCOF1-213ENST00000514442 IL6P05231 212 aa12.9□□□□□ -0.35
TCOF1-213ENST00000514442 DCKP27707 260 aa12.9□□□□□ -0.35
TCOF1-213ENST00000514442 ALDH3A2P51648 485 aa12.9□□□□□ -0.35
TCOF1-213ENST00000514442 CD83Q01151 205 aa12.9□□□□□ -0.35
TCOF1-213ENST00000514442 ATAT1Q5SQI0 421 aa12.9□□□□□ -0.35
TCOF1-213ENST00000514442 TMPRSS11AQ6ZMR5 421 aa12.9□□□□□ -0.35
TCOF1-213ENST00000514442 OR14C36Q8NHC7 312 aa12.9□□□□□ -0.35
TCOF1-213ENST00000514442 ALPK1Q96QP1 1244 aa12.9□□□□□ -0.35
TCOF1-213ENST00000514442 FCRL5Q96RD9 977 aa12.9□□□□□ -0.35
TCOF1-213ENST00000514442 KCNS3Q9BQ31 491 aa12.9□□□□□ -0.35
TCOF1-213ENST00000514442 DHRS4Q9BTZ2 278 aa12.9□□□□□ -0.35
TCOF1-213ENST00000514442 RASSF1Q9NS23 344 aa12.9□□□□□ -0.35
TCOF1-213ENST00000514442 PAQR5Q9NXK6 330 aaPredicted RBP12.9□□□□□ -0.35
TCOF1-213ENST00000514442 NUDT14O95848 222 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 AZGP1P25311 298 aaKnown RBP12.89□□□□□ -0.35
TCOF1-213ENST00000514442 ZNF45Q02386 682 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 MED22Q15528 200 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.89□□□□□ -0.35
TCOF1-213ENST00000514442 RALGPS2Q86X27 583 aaPredicted RBP12.89□□□□□ -0.35
TCOF1-213ENST00000514442 STON2Q8WXE9 905 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 PAAF1Q9BRP4 392 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 MMP27Q9H306 513 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 CCM2LQ9NUG4 571 aaPredicted RBP12.89□□□□□ -0.35
TCOF1-213ENST00000514442 ZNF624Q9P2J8 865 aaPredicted RBP12.89□□□□□ -0.35
TCOF1-213ENST00000514442 MBD2Q9UBB5 411 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 DNAJB9Q9UBS3 223 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 ALPIP09923 528 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 MVKQ03426 396 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 NAE1Q13564 534 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 TBRG1Q3YBR2 411 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 PGM2L1Q6PCE3 622 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 PIK3C3Q8NEB9 887 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 CLP1Q92989 425 aaKnown RBP12.89□□□□□ -0.35
TCOF1-213ENST00000514442 HERPUD2Q9BSE4 406 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 CREBZFQ9NS37 354 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 RFXANKO14593 260 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 FMO3P31513 532 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 SCNN1AP37088 669 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 MS4A2Q01362 244 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 CLCQ05315 142 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 LDLRAD1Q5T700 205 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 LCN1P1Q5VSP4 162 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 TYW3Q6IPR3 259 aaKnown RBP12.89□□□□□ -0.35
TCOF1-213ENST00000514442 MZT2AQ6P582 158 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 CASP12Q6UXS9 341 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 AP3S1Q92572 193 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 TIFAQ96CG3 184 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 MUS81Q96NY9 551 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 FUNDC2Q9BWH2 189 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 SLA2Q9H6Q3 261 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 EIF2B4Q9UI10 523 aaKnown RBP12.89□□□□□ -0.35
TCOF1-213ENST00000514442 MYH3P11055 1940 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 FAM240BA0A1B0GVZ2 78 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 A8MV72 311 aaPredicted RBP12.89□□□□□ -0.35
TCOF1-213ENST00000514442 BEST1O76090 585 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 IFNA16P05015 189 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 NOS3P29474 1203 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 ALDH3B2P48448 385 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 RPIAP49247 311 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 CDC42P60953 191 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 PITX1P78337 314 aaPredicted RBP12.89□□□□□ -0.35
TCOF1-213ENST00000514442 FPGSQ05932 587 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 ACAP2Q15057 778 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 HLA-DQA1Q5Y7H0 255 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 TPGS2Q68CL5 300 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 CNKSR3Q6P9H4 555 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 XKRXQ6PP77 449 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 CERS6Q6ZMG9 384 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 PQLC3Q8N755 202 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 ZNF366Q8N895 744 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 IPCEF1Q8WWN9 437 aaPredicted RBP12.89□□□□□ -0.35
TCOF1-213ENST00000514442 AURKBQ96GD4 344 aaPredicted RBP12.89□□□□□ -0.35
TCOF1-213ENST00000514442 PHOX2BQ99453 314 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 SLC39A3Q9BRY0 314 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 SYT11Q9BT88 431 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 OSBPL2Q9H1P3 480 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 IRS2Q9Y4H2 1338 aa12.89□□□□□ -0.35
TCOF1-213ENST00000514442 NEMP2A6NFY4 417 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 GPR32O75388 356 aa12.88□□□□□ -0.35
TCOF1-213ENST00000514442 STK16O75716 305 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms