RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 HAUS4Q9H6D7 363 aa11.11□□□□□ -0.63
RNF4-216ENST00000511859 PLA2G3Q9NZ20 509 aa11.11□□□□□ -0.63
RNF4-216ENST00000511859 IL1RAPL1Q9NZN1 696 aa11.11□□□□□ -0.63
RNF4-216ENST00000511859 FAM8A1Q9UBU6 413 aa11.11□□□□□ -0.63
RNF4-216ENST00000511859 PKP3Q9Y446 797 aa11.11□□□□□ -0.63
RNF4-216ENST00000511859 RTTNQ86VV8 2226 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 LOC285095A0A1B0GVY8 99 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 GPR39O43194 453 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 EPOP01588 193 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 CTSBP07858 339 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 UGT2B7P16662 529 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 SOX11P35716 441 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 SSR1P43307 286 aaKnown RBP11.1□□□□□ -0.63
RNF4-216ENST00000511859 GCGRP47871 477 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 AP1B1Q10567 949 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 C3AR1Q16581 482 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 LONRF1Q17RB8 773 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 KRTCAP3Q53RY4 240 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 YOD1Q5VVQ6 348 aaPredicted RBP11.1□□□□□ -0.63
RNF4-216ENST00000511859 ZNF449Q6P9G9 518 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 MEX3BQ6ZN04 569 aaKnown RBP11.1□□□□□ -0.63
RNF4-216ENST00000511859 ZNF571Q7Z3V5 609 aaPredicted RBP11.1□□□□□ -0.63
RNF4-216ENST00000511859 TGIF2LYQ8IUE0 185 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 PQLC3Q8N755 202 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 PHC3Q8NDX5 983 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 SPATA22Q8NHS9 363 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 PSMF1Q92530 271 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 OR2A14Q96R47 310 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 PTGFRNQ9P2B2 879 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 ZNF835Q9Y2P0 537 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 MEMO1Q9Y316 297 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 JMJD1CQ15652 2540 aa11.1□□□□□ -0.63
RNF4-216ENST00000511859 CPAMD8Q8IZJ3 1885 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 A0A0J9YY10 115 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 VSTM2BA6NLU5 285 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 MYO1FO00160 1098 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 DDX3XO00571 662 aaKnown RBP eCLIP11.09□□□□□ -0.632e-8■■■□□ 17.9
RNF4-216ENST00000511859 GAPDHSO14556 408 aaPredicted RBP11.09□□□□□ -0.63
RNF4-216ENST00000511859 DSCR3O14972 297 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 CBFA2T2O43439 604 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 SGTAO43765 313 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 MLYCDO95822 493 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 RALBP11234 206 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 TNNT3P45378 269 aaPredicted RBP11.09□□□□□ -0.63
RNF4-216ENST00000511859 TMPRSS15P98073 1019 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 ATP13A4Q4VNC1 1196 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 Q6ZPB1 254 aaPredicted RBP11.09□□□□□ -0.63
RNF4-216ENST00000511859 NDUFAF7Q7L592 441 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 GLT6D1Q7Z4J2 308 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 DAAM2Q86T65 1068 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 SPPL2CQ8IUH8 684 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 LILRA3Q8N6C8 439 aaPredicted RBP11.09□□□□□ -0.63
RNF4-216ENST00000511859 THAP3Q8WTV1 239 aaPredicted RBP11.09□□□□□ -0.63
RNF4-216ENST00000511859 DCUN1D1Q96GG9 259 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 NRTNQ99748 197 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 FOXC2Q99958 501 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 RNF32Q9H0A6 362 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 OR52A5Q9H2C5 316 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 CXXC4Q9H2H0 198 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 XKR8Q9H6D3 395 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 SOX17Q9H6I2 414 aaPredicted RBP11.09□□□□□ -0.63
RNF4-216ENST00000511859 ZNF160Q9HCG1 818 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 EURLQ9NYK6 297 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 TNFRSF10DQ9UBN6 386 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 TINAGQ9UJW2 476 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 ANAPC7Q9UJX3 599 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 SCN2AQ99250 2005 aa11.09□□□□□ -0.63
RNF4-216ENST00000511859 FLNAP21333 2647 aaKnown RBP11.08□□□□□ -0.64
RNF4-216ENST00000511859 HCFC1P51610 2035 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 A0A0A6YYK5 440 aaPredicted RBP11.08□□□□□ -0.64
RNF4-216ENST00000511859 FOXO6A8MYZ6 492 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 MAP2K7O14733 419 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 PRAMEF2O60811 474 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 ZRANB2O95218 330 aaKnown RBP eCLIP11.08□□□□□ -0.64
RNF4-216ENST00000511859 BMP10O95393 424 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 PRR35P0CG20 571 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 ACPPP15309 386 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 SHMT2P34897 504 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 PRKCIP41743 596 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 PRLHRP49683 370 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 PPP2R2AP63151 447 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 CACNG1Q06432 222 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 RPA4Q13156 261 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 PRKG2Q13237 762 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 BOP1Q14137 746 aaKnown RBP11.08□□□□□ -0.64
RNF4-216ENST00000511859 PDK1Q15118 436 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 TEX44Q53QW1 395 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 ATG9BQ674R7 924 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 UNC5AQ6ZN44 842 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 SHISA6Q6ZSJ9 500 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 TRIM73Q86UV7 250 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 FAM20CQ8IXL6 584 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 BRIX1Q8TDN6 353 aaKnown RBP11.08□□□□□ -0.64
RNF4-216ENST00000511859 CA5BP1Q8WTZ4 195 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 HEXDCQ8WVB3 486 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 TFGQ92734 400 aaPredicted RBP11.08□□□□□ -0.64
RNF4-216ENST00000511859 MAGED4Q96JG8 741 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 BTBD6Q96KE9 485 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 RNF157Q96PX1 679 aa11.08□□□□□ -0.64
RNF4-216ENST00000511859 CEP41Q9BYV8 373 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms