RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 KHDRBS2Q5VWX1 349 aaKnown RBP2.17□□□□□ -2.06
NUP54-208ENST00000508604 CES4AQ5XG92 561 aa2.17□□□□□ -2.06
NUP54-208ENST00000508604 DMKNQ6E0U4 476 aaPredicted RBP2.17□□□□□ -2.06
NUP54-208ENST00000508604 CYP20A1Q6UW02 462 aa2.17□□□□□ -2.06
NUP54-208ENST00000508604 TMEM207Q6UWW9 146 aa2.17□□□□□ -2.06
NUP54-208ENST00000508604 TSPYL6Q8N831 410 aa2.17□□□□□ -2.06
NUP54-208ENST00000508604 KLHL30-AS1Q8NEE0 82 aa2.17□□□□□ -2.06
NUP54-208ENST00000508604 CHCHD5Q9BSY4 110 aa2.17□□□□□ -2.06
NUP54-208ENST00000508604 ARRDC1-AS1Q9H2J1 176 aa2.17□□□□□ -2.06
NUP54-208ENST00000508604 P4HTMQ9NXG6 502 aa2.17□□□□□ -2.06
NUP54-208ENST00000508604 PPP2R2CQ9Y2T4 447 aa2.17□□□□□ -2.06
NUP54-208ENST00000508604 FAM237BA0A1B0GVD1 139 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 A0A1W2PR80 420 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 SHISA9B4DS77 424 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 GLRA3O75311 464 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 BSGP35613 385 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 CCT5P48643 541 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 B3GALT5-AS1P59052 145 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 CD300CQ08708 224 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 RARS2Q5T160 578 aaKnown RBP2.16□□□□□ -2.06
NUP54-208ENST00000508604 INTS11Q5TA45 600 aaKnown RBP2.16□□□□□ -2.06
NUP54-208ENST00000508604 GRTP1Q5TC63 336 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 HAUS6Q7Z4H7 955 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 RTN4RL2Q86UN3 420 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 ZFAND4Q86XD8 727 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 CFAP206Q8IYR0 622 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 KLHDC1Q8N7A1 406 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 ETNPPLQ8TBG4 499 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 C10orf90Q96M02 699 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 GAD1Q99259 594 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 MGME1Q9BQP7 344 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 CHMP4AQ9BY43 222 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 SPHK1Q9NYA1 384 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 GTSE1Q9NYZ3 720 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 SLC13A4Q9UKG4 626 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 TSPAN16Q9UKR8 245 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 PCDHGA5Q9Y5G8 931 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 LYVE1Q9Y5Y7 322 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 KCNE2Q9Y6J6 123 aa2.16□□□□□ -2.06
NUP54-208ENST00000508604 TMEM129A0AVI4 362 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 HYKKA2RU49 373 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 TGFB1I1O43294 461 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 CDK2AP2O75956 126 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 SLCO2B1O94956 709 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 LDHAP00338 332 aaKnown RBP2.15□□□□□ -2.06
NUP54-208ENST00000508604 PRKAR1AP10644 381 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 FDPSP14324 419 aaKnown RBP2.15□□□□□ -2.06
NUP54-208ENST00000508604 MAZP56270 477 aaKnown RBP2.15□□□□□ -2.06
NUP54-208ENST00000508604 BIRC2Q13490 618 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 EIF4A2Q14240 407 aaKnown RBP2.15□□□□□ -2.06
NUP54-208ENST00000508604 TNIP1Q15025 636 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 EFTUD2Q15029 972 aaKnown RBP eCLIP2.15□□□□□ -2.06
NUP54-208ENST00000508604 GDPGP1Q6ZNW5 385 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 G2E3Q7L622 706 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 COMMD2Q86X83 199 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 FAM131BQ86XD5 332 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 FAM114A1Q8IWE2 563 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 EID3Q8N140 333 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 TRIML1Q8N9V2 468 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 HJURPQ8NCD3 748 aaPredicted RBP2.15□□□□□ -2.06
NUP54-208ENST00000508604 GATAD1Q8WUU5 269 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 IRGQQ8WZA9 623 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 CALML4Q96GE6 196 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 WDFY2Q96P53 400 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 ARPC5LQ9BPX5 153 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 C1QTNF1Q9BXJ1 281 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 TDRD1Q9BXT4 1180 aaKnown RBP2.15□□□□□ -2.06
NUP54-208ENST00000508604 PAIP1Q9H074 479 aaKnown RBP2.15□□□□□ -2.06
NUP54-208ENST00000508604 MIS12Q9H081 205 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 EHD2Q9NZN4 543 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 BCCIPQ9P287 314 aaKnown RBP eCLIP2.15□□□□□ -2.06
NUP54-208ENST00000508604 NENFQ9UMX5 172 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 TNNQ9UQP3 1299 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 WIPI2Q9Y4P8 454 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 COMMD10Q9Y6G5 202 aa2.15□□□□□ -2.06
NUP54-208ENST00000508604 ATP6V1B1P15313 513 aa2.15□□□□□ -2.07
NUP54-208ENST00000508604 MGMTP16455 207 aa2.15□□□□□ -2.07
NUP54-208ENST00000508604 PNRC1Q12796 327 aaPredicted RBP2.15□□□□□ -2.07
NUP54-208ENST00000508604 KRT33BQ14525 404 aa2.15□□□□□ -2.07
NUP54-208ENST00000508604 MS4A18Q3C1V0 323 aa2.15□□□□□ -2.07
NUP54-208ENST00000508604 PRR30Q53SZ7 412 aaPredicted RBP2.15□□□□□ -2.07
NUP54-208ENST00000508604 TMEM198Q66K66 360 aa2.15□□□□□ -2.07
NUP54-208ENST00000508604 IGFL3Q6UXB1 125 aa2.15□□□□□ -2.07
NUP54-208ENST00000508604 TMEM139Q8IV31 216 aa2.15□□□□□ -2.07
NUP54-208ENST00000508604 OR52N5Q8NH56 324 aa2.15□□□□□ -2.07
NUP54-208ENST00000508604 CCDC107Q8WV48 283 aa2.15□□□□□ -2.07
NUP54-208ENST00000508604 ATXN7L3BQ96GX2 97 aa2.15□□□□□ -2.07
NUP54-208ENST00000508604 C1orf74Q96LT6 269 aa2.15□□□□□ -2.07
NUP54-208ENST00000508604 SLITRK2Q9H156 845 aa2.15□□□□□ -2.07
NUP54-208ENST00000508604 C19orf25Q9UFG5 118 aaPredicted RBP2.15□□□□□ -2.07
NUP54-208ENST00000508604 PA2G4Q9UQ80 394 aaKnown RBP2.15□□□□□ -2.07
NUP54-208ENST00000508604 H0Y9J4 135 aa2.14□□□□□ -2.07
NUP54-208ENST00000508604 TO15178 435 aa2.14□□□□□ -2.07
NUP54-208ENST00000508604 SSX4O60224 188 aa2.14□□□□□ -2.07
NUP54-208ENST00000508604 HS6ST1O60243 411 aa2.14□□□□□ -2.07
NUP54-208ENST00000508604 PDHA2P29803 388 aa2.14□□□□□ -2.07
NUP54-208ENST00000508604 ITPRIPL2Q3MIP1 535 aa2.14□□□□□ -2.07
NUP54-208ENST00000508604 FAM182AQ5T1J6 154 aa2.14□□□□□ -2.07
NUP54-208ENST00000508604 LCLAT1Q6UWP7 414 aa2.14□□□□□ -2.07
NUP54-208ENST00000508604 ZER1Q7Z7L7 766 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms