RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 CCDC182A6NF36 153 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 BTN3A3O00478 584 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CA3P07451 260 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ELFN1P0C7U0 828 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RPL10P27635 214 aaKnown RBP10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ERVFC1P60507 584 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 WDR5P61964 334 aaKnown RBP10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 NAB1Q13506 487 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CEACAM7Q14002 265 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SQLEQ14534 574 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 MPPE1Q53F39 396 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 COLEC12Q5KU26 742 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 LUZP2Q86TE4 346 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 Q8N9G6 341 aaPredicted RBP10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ITFG1Q8TB96 612 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TWIST2Q8WVJ9 160 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SELENOMQ8WWX9 145 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SUSD6Q92537 303 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ZNF419Q96HQ0 510 aaPredicted RBP10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 FOPNLQ96NB1 174 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 MIR1-1HGQ9H1L0 117 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SP140LQ9H930 580 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TDP1Q9NUW8 608 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 A8MV72 311 aaPredicted RBP10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 LOC110117498-PIK3R3F6TDL0 507 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PITPNM1O00562 1244 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CDK14O94921 469 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CHRNB1P11230 501 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 OPRL1P41146 370 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ALDH9A1P49189 494 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CYP4F2P78329 520 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 BNC1Q01954 994 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TRAP1Q12931 704 aaKnown RBP10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PDZK1Q5T2W1 519 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 FAM91A1Q658Y4 838 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 UGT3A1Q6NUS8 523 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CD300LGQ6UXG3 332 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CHST14Q8NCH0 376 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ZNF540Q8NDQ6 660 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SETD9Q8NE22 299 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SHKBP1Q8TBC3 707 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RNF31Q96EP0 1072 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 C11orf84Q9BUA3 381 aaPredicted RBP10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PRRG3Q9BZD7 231 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RMND5AQ9H871 391 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 COMMD8Q9NX08 183 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 LIMD1Q9UGP4 676 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ZDBF2Q9HCK1 2354 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 FAM172BPA6NC97 362 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SLC7A4O43246 635 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 AP1G1O43747 822 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RSL1D1O76021 490 aaKnown RBP10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RHOP08100 348 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 BMP1P13497 986 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 NCK1P16333 377 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SOAT1P35610 550 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 HPCAL1P37235 193 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 MAGEA11P43364 429 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SLC9A3P48764 834 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CLCQ05315 142 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 FPGSQ05932 587 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 EPS8Q12929 822 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TRIM71Q2Q1W2 868 aaKnown RBP10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 LRRC66Q68CR7 880 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 KIAA0408Q6ZU52 694 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 EID3Q8N140 333 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 GOLM1Q8NBJ4 401 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 C19orf60Q96EN9 201 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 IPPKQ9H8X2 491 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 DUS2Q9NX74 493 aaKnown RBP10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ZNF224Q9NZL3 707 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PDE10AQ9Y233 779 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 VPS9D1Q9Y2B5 631 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 POLR3HQ9Y535 204 aaPredicted RBP10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 INSL6Q9Y581 213 aa10.53□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 KNTC1P50748 2209 aa10.52□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ABHD14A-ACY1A0A1B0GW23 586 aa10.52□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 EFCAB10A6NFE3 127 aa10.52□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CPNE3O75131 537 aaKnown RBP10.52□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ECI2O75521 394 aa10.52□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PRAMEF12O95522 483 aa10.52□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 IRS1P35568 1242 aa10.52□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RFX3P48380 749 aa10.52□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 BLVRAP53004 296 aa10.52□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TMBIM6P55061 237 aa10.52□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PHKG1Q16816 387 aa10.52□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TBC1D21Q8IYX1 336 aa10.52□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CENPLQ8N0S6 344 aaPredicted RBP10.52□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ABHD11Q8NFV4 315 aa10.52□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 OR7G1Q8NGA0 311 aa10.52□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 OR56A4Q8NGH8 313 aa10.52□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 FAM126AQ9BYI3 521 aaPredicted RBP10.52□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CLEC4MQ9H2X3 399 aaPredicted RBP10.52□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RIC8BQ9NVN3 520 aa10.52□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RAPGEFL1Q9UHV5 662 aa10.52□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 C3orf18Q9UK00 162 aa10.52□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SESN1Q9Y6P5 492 aa10.52□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 WDR87Q6ZQQ6 2873 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SAP18O00422 153 aaKnown RBP10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 LDB2O43679 373 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms