RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 GALNT16Q8N428 558 aa11.95□□□□□ -0.5
CPSF3-204ENST00000489403 DNAJC22Q8N4W6 341 aa11.95□□□□□ -0.5
CPSF3-204ENST00000489403 FAM71DQ8N9W8 422 aa11.95□□□□□ -0.5
CPSF3-204ENST00000489403 OR2Y1Q8NGV0 311 aa11.95□□□□□ -0.5
CPSF3-204ENST00000489403 INPP5DQ92835 1189 aa11.95□□□□□ -0.5
CPSF3-204ENST00000489403 CALR3Q96L12 384 aaKnown RBP11.95□□□□□ -0.5
CPSF3-204ENST00000489403 ZNF552Q9H707 407 aaPredicted RBP11.95□□□□□ -0.5
CPSF3-204ENST00000489403 ASF1BQ9NVP2 202 aa11.95□□□□□ -0.5
CPSF3-204ENST00000489403 OR6C2Q9NZP2 312 aa11.95□□□□□ -0.5
CPSF3-204ENST00000489403 POLG2Q9UHN1 485 aa11.95□□□□□ -0.5
CPSF3-204ENST00000489403 SRPK3Q9UPE1 567 aa11.95□□□□□ -0.5
CPSF3-204ENST00000489403 B3GNT3Q9Y2A9 372 aa11.95□□□□□ -0.5
CPSF3-204ENST00000489403 REXO2Q9Y3B8 237 aaKnown RBP11.95□□□□□ -0.5
CPSF3-204ENST00000489403 SPTAN1Q13813 2472 aaKnown RBP11.94□□□□□ -0.5
CPSF3-204ENST00000489403 GRID2IPA4D2P6 1211 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 BTNL10A8MVZ5 291 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 ISM1B1AKI9 464 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 PEX12O00623 359 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 UMODP07911 640 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 SLC5A12Q1EHB4 618 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 NKAIN1Q4KMZ8 207 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 SYTL3Q4VX76 610 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 CCDC38Q502W7 563 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 TLDC1Q6P9B6 456 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 IGFL3Q6UXB1 125 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 PPP1R32Q7Z5V6 425 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 FAM20CQ8IXL6 584 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 TAB3Q8N5C8 712 aaPredicted RBP11.94□□□□□ -0.5
CPSF3-204ENST00000489403 CISD2Q8N5K1 135 aaKnown RBP11.94□□□□□ -0.5
CPSF3-204ENST00000489403 LRRC57Q8N9N7 239 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 TTC13Q8NBP0 860 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 OR13J1Q8NGT2 312 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 RANBP9Q96S59 729 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 TMEM121Q9BTD3 319 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 AP1M1Q9BXS5 423 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 TRIM5Q9C035 493 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 LACRTQ9GZZ8 138 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 SLC22A11Q9NSA0 550 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 TXLNGQ9NUQ3 528 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 P4HTMQ9NXG6 502 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 IMPACTQ9P2X3 320 aa11.94□□□□□ -0.5
CPSF3-204ENST00000489403 ERRFI1Q9UJM3 462 aaPredicted RBP11.94□□□□□ -0.5
CPSF3-204ENST00000489403 R3HDM2Q9Y2K5 976 aaKnown RBP11.94□□□□□ -0.5
CPSF3-204ENST00000489403 EPN1Q9Y6I3 576 aaPredicted RBP11.94□□□□□ -0.5
CPSF3-204ENST00000489403 SPTBN1Q01082 2364 aaKnown RBP11.93□□□□□ -0.5
CPSF3-204ENST00000489403 ANKRD12Q6UB98 2062 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 CCDC162PA2VCL2 907 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 GOLGA6L9A6NEM1 432 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 WIPF3A6NGB9 483 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 OR1I1O60431 355 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 CBX6O95503 412 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 CLDN1O95832 211 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 LDLRP01130 860 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 IGHEP01854 428 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 ALPPP05187 535 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 CD63P08962 238 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 OR56A5P0C7T3 313 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 MAGP20916 626 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 PKLRP30613 574 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 GCGRP47871 477 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 PLOD1Q02809 727 aaPredicted RBP11.93□□□□□ -0.5
CPSF3-204ENST00000489403 KLF1Q13351 362 aaPredicted RBP11.93□□□□□ -0.5
CPSF3-204ENST00000489403 KIR2DS3Q14952 304 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 P3H1Q32P28 736 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 CRB2Q5IJ48 1285 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 LYPLAL1Q5VWZ2 237 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 OR52K1Q8NGK4 314 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 PTERQ96BW5 349 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 ALS2CR12Q96Q35 445 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 NDC1Q9BTX1 674 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 ILKAPQ9H0C8 392 aaPredicted RBP11.93□□□□□ -0.5
CPSF3-204ENST00000489403 ZBTB20Q9HC78 741 aaPredicted RBP11.93□□□□□ -0.5
CPSF3-204ENST00000489403 IRAK4Q9NWZ3 460 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 PACSIN2Q9UNF0 486 aaPredicted RBP11.93□□□□□ -0.5
CPSF3-204ENST00000489403 PLCL2Q9UPR0 1127 aa11.93□□□□□ -0.5
CPSF3-204ENST00000489403 HIVEP3Q5T1R4 2406 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 AGPSO00116 658 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 PSMD3O43242 534 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 IPO13O94829 963 aaKnown RBP11.92□□□□□ -0.5
CPSF3-204ENST00000489403 GOT2P00505 430 aaKnown RBP11.92□□□□□ -0.5
CPSF3-204ENST00000489403 ITGAXP20702 1163 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 COL8A1P27658 744 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 CCR7P32248 378 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 CSE1LP55060 971 aaKnown RBP11.92□□□□□ -0.5
CPSF3-204ENST00000489403 SOX8P57073 446 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 CYP2A13Q16696 494 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 ZNF787Q6DD87 383 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 RAD9BQ6WBX8 426 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 Q6ZS92 163 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 MAMDC2Q7Z304 686 aaPredicted RBP11.92□□□□□ -0.5
CPSF3-204ENST00000489403 VRK3Q8IV63 474 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 LMNTD1Q8N9Z9 388 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 LINC01555Q8NAE3 123 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 ACRBPQ8NEB7 543 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 SLC35B2Q8TB61 432 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 LKAAEAR1Q8TD35 194 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 TM9SF4Q92544 642 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 HDAC10Q969S8 669 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 PANX2Q96RD6 677 aa11.92□□□□□ -0.5
CPSF3-204ENST00000489403 MENTQ9BUN1 341 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms