RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 DENND5AQ6IQ26 1287 aa14.75□□□□□ -0.05
MCF2L-228ENST00000487354 RPUSD3Q6P087 351 aaKnown RBP14.75□□□□□ -0.05
MCF2L-228ENST00000487354 SNX20Q7Z614 316 aa14.75□□□□□ -0.05
MCF2L-228ENST00000487354 DTWD1Q8N5C7 304 aa14.75□□□□□ -0.05
MCF2L-228ENST00000487354 CLDN19Q8N6F1 224 aa14.75□□□□□ -0.05
MCF2L-228ENST00000487354 ULK4Q96C45 1275 aa14.75□□□□□ -0.05
MCF2L-228ENST00000487354 DCUN1D1Q96GG9 259 aa14.75□□□□□ -0.05
MCF2L-228ENST00000487354 VAT1Q99536 393 aa14.75□□□□□ -0.05
MCF2L-228ENST00000487354 FSD1LQ9BXM9 530 aa14.75□□□□□ -0.05
MCF2L-228ENST00000487354 TRIM8Q9BZR9 551 aa14.75□□□□□ -0.05
MCF2L-228ENST00000487354 SLC26A1Q9H2B4 701 aa14.75□□□□□ -0.05
MCF2L-228ENST00000487354 C10orf88Q9H8K7 445 aa14.75□□□□□ -0.05
MCF2L-228ENST00000487354 WDR54Q9H977 334 aa14.75□□□□□ -0.05
MCF2L-228ENST00000487354 TXLNGQ9NUQ3 528 aa14.75□□□□□ -0.05
MCF2L-228ENST00000487354 OLAHQ9NV23 265 aa14.75□□□□□ -0.05
MCF2L-228ENST00000487354 CTSFQ9UBX1 484 aa14.75□□□□□ -0.05
MCF2L-228ENST00000487354 RSPH14Q9UHP6 348 aa14.75□□□□□ -0.05
MCF2L-228ENST00000487354 CDC23Q9UJX2 597 aa14.75□□□□□ -0.05
MCF2L-228ENST00000487354 GTF3C3Q9Y5Q9 886 aa14.75□□□□□ -0.05
MCF2L-228ENST00000487354 C5orf60A6NFR6 353 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 C2orf81A6NN90 581 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 JRKO75564 520 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 RALBP11234 206 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 ACRV1P26436 265 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 SHMT2P34897 504 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 ARHGAP25P42331 645 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 ZXDCQ2QGD7 858 aaPredicted RBP14.74□□□□□ -0.05
MCF2L-228ENST00000487354 FAM180AQ6UWF9 173 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 SHISA6Q6ZSJ9 500 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 OVCH1Q7RTY7 1134 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 PARP9Q8IXQ6 854 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 OR11G2Q8NGC1 345 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 N4BP2L2Q92802 583 aaPredicted RBP14.74□□□□□ -0.05
MCF2L-228ENST00000487354 HAUS1Q96CS2 278 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 CCDC120Q96HB5 630 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 MENTQ9BUN1 341 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 LHPPQ9H008 270 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 ENAMQ9NRM1 1142 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 ZDHHC3Q9NYG2 299 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 EURLQ9NYK6 297 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 PLAGL1Q9UM63 463 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 PLCL2Q9UPR0 1127 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 KLHL20Q9Y2M5 609 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 LUC7L2Q9Y383 392 aaKnown RBP14.74□□□□□ -0.05
MCF2L-228ENST00000487354 PRSS21Q9Y6M0 314 aa14.74□□□□□ -0.05
MCF2L-228ENST00000487354 hCG_1818297A0A087WSY0 165 aa14.73□□□□□ -0.05
MCF2L-228ENST00000487354 A0A1B0GX78 115 aa14.73□□□□□ -0.05
MCF2L-228ENST00000487354 MED26O95402 600 aa14.73□□□□□ -0.05
MCF2L-228ENST00000487354 ITGALP20701 1170 aa14.73□□□□□ -0.05
MCF2L-228ENST00000487354 MAGP20916 626 aa14.73□□□□□ -0.05
MCF2L-228ENST00000487354 PTGER4P35408 488 aa14.73□□□□□ -0.05
MCF2L-228ENST00000487354 TNNT3P45378 269 aaPredicted RBP14.73□□□□□ -0.05
MCF2L-228ENST00000487354 MFAP5Q13361 173 aa14.73□□□□□ -0.05
MCF2L-228ENST00000487354 TFDP2Q14188 446 aa14.73□□□□□ -0.05
MCF2L-228ENST00000487354 TESK1Q15569 626 aa14.73□□□□□ -0.05
MCF2L-228ENST00000487354 SLC5A12Q1EHB4 618 aa14.73□□□□□ -0.05
MCF2L-228ENST00000487354 TUBB8Q3ZCM7 444 aa14.73□□□□□ -0.05
MCF2L-228ENST00000487354 KAZNQ674X7 775 aa14.73□□□□□ -0.05
MCF2L-228ENST00000487354 LINC00696Q6ZRV3 163 aa14.73□□□□□ -0.05
MCF2L-228ENST00000487354 TTLL10Q6ZVT0 673 aa14.73□□□□□ -0.05
MCF2L-228ENST00000487354 BZW1Q7L1Q6 419 aaKnown RBP14.73□□□□□ -0.05
MCF2L-228ENST00000487354 GDF7Q7Z4P5 450 aa14.73□□□□□ -0.05
MCF2L-228ENST00000487354 SERPINA9Q86WD7 417 aa14.73□□□□□ -0.05
MCF2L-228ENST00000487354 PIANPQ8IYJ0 282 aa14.73□□□□□ -0.05
MCF2L-228ENST00000487354 ZNF295-AS1Q8N0V1 137 aa14.73□□□□□ -0.05
MCF2L-228ENST00000487354 BCORP1Q8N888 145 aa14.73□□□□□ -0.05
MCF2L-228ENST00000487354 C19orf43Q9BQ61 176 aa14.73□□□□□ -0.05
MCF2L-228ENST00000487354 NDC1Q9BTX1 674 aa14.73□□□□□ -0.05
MCF2L-228ENST00000487354 SOX17Q9H6I2 414 aaPredicted RBP14.73□□□□□ -0.05
MCF2L-228ENST00000487354 DDX56Q9NY93 547 aaKnown RBP14.73□□□□□ -0.05
MCF2L-228ENST00000487354 OR6C2Q9NZP2 312 aa14.73□□□□□ -0.05
MCF2L-228ENST00000487354 VSTM2BA6NLU5 285 aa14.72□□□□□ -0.05
MCF2L-228ENST00000487354 BHMG1C9JSJ3 638 aaPredicted RBP14.72□□□□□ -0.05
MCF2L-228ENST00000487354 CFAP99D6REC4 459 aa14.72□□□□□ -0.05
MCF2L-228ENST00000487354 ALBP02768 609 aa14.72□□□□□ -0.05
MCF2L-228ENST00000487354 TNNT1P13805 278 aa14.72□□□□□ -0.05
MCF2L-228ENST00000487354 COMTP21964 271 aa14.72□□□□□ -0.05
MCF2L-228ENST00000487354 MCM3P25205 808 aa14.72□□□□□ -0.05
MCF2L-228ENST00000487354 RBL1P28749 1068 aa14.72□□□□□ -0.05
MCF2L-228ENST00000487354 MC4RP32245 332 aa14.72□□□□□ -0.05
MCF2L-228ENST00000487354 SOX11P35716 441 aa14.72□□□□□ -0.05
MCF2L-228ENST00000487354 MARCKSL1P49006 195 aa14.72□□□□□ -0.05
MCF2L-228ENST00000487354 GEMP55040 296 aa14.72□□□□□ -0.05
MCF2L-228ENST00000487354 ZNF630Q2M218 657 aaPredicted RBP14.72□□□□□ -0.05
MCF2L-228ENST00000487354 FCRL6Q6DN72 434 aa14.72□□□□□ -0.05
MCF2L-228ENST00000487354 ISLR2Q6UXK2 745 aa14.72□□□□□ -0.05
MCF2L-228ENST00000487354 BNC2Q6ZN30 1099 aaPredicted RBP14.72□□□□□ -0.05
MCF2L-228ENST00000487354 LMNTD1Q8N9Z9 388 aa14.72□□□□□ -0.05
MCF2L-228ENST00000487354 LINC01555Q8NAE3 123 aa14.72□□□□□ -0.05
MCF2L-228ENST00000487354 OR5K2Q8NHB8 316 aa14.72□□□□□ -0.05
MCF2L-228ENST00000487354 HEXDCQ8WVB3 486 aa14.72□□□□□ -0.05
MCF2L-228ENST00000487354 PSMF1Q92530 271 aa14.72□□□□□ -0.05
MCF2L-228ENST00000487354 NR4A3Q92570 626 aa14.72□□□□□ -0.05
MCF2L-228ENST00000487354 P3H4Q92791 437 aa14.72□□□□□ -0.05
MCF2L-228ENST00000487354 THOC3Q96J01 351 aaKnown RBP14.72□□□□□ -0.05
MCF2L-228ENST00000487354 DNAJC1Q96KC8 554 aaKnown RBP14.72□□□□□ -0.05
MCF2L-228ENST00000487354 ZNF285Q96NJ3 590 aa14.72□□□□□ -0.05
MCF2L-228ENST00000487354 EPS8L2Q9H6S3 715 aa14.72□□□□□ -0.05
MCF2L-228ENST00000487354 MRM3Q9HC36 420 aaKnown RBP14.72□□□□□ -0.05
MCF2L-228ENST00000487354 TRHDEQ9UKU6 1024 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms