RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 CHSY3Q70JA7 882 aa10.81□□□□□ -0.68
HDAC6-228ENST00000486227 LIX1Q8N485 282 aa10.81□□□□□ -0.68
HDAC6-228ENST00000486227 RTP4Q96DX8 246 aa10.81□□□□□ -0.68
HDAC6-228ENST00000486227 SMAD5Q99717 465 aaKnown RBP10.81□□□□□ -0.68
HDAC6-228ENST00000486227 AIF1LQ9BQI0 150 aa10.81□□□□□ -0.68
HDAC6-228ENST00000486227 ZDHHC7Q9NXF8 308 aa10.81□□□□□ -0.68
HDAC6-228ENST00000486227 SUCOQ9UBS9 1254 aaKnown RBP10.81□□□□□ -0.68
HDAC6-228ENST00000486227 PDE9AO76083 593 aa10.81□□□□□ -0.68
HDAC6-228ENST00000486227 HNRNPA1P09651 372 aaKnown RBP eCLIP10.81□□□□□ -0.68
HDAC6-228ENST00000486227 NR2F1P10589 423 aa10.81□□□□□ -0.68
HDAC6-228ENST00000486227 THRBP10828 461 aa10.81□□□□□ -0.68
HDAC6-228ENST00000486227 KCNA5P22460 613 aa10.81□□□□□ -0.68
HDAC6-228ENST00000486227 RXRGP48443 463 aa10.81□□□□□ -0.68
HDAC6-228ENST00000486227 CREB5Q02930 508 aa10.81□□□□□ -0.68
HDAC6-228ENST00000486227 OGFRL1Q5TC84 451 aaPredicted RBP10.81□□□□□ -0.68
HDAC6-228ENST00000486227 TPRG1Q6ZUI0 275 aa10.81□□□□□ -0.68
HDAC6-228ENST00000486227 CHST15Q7LFX5 561 aaPredicted RBP10.81□□□□□ -0.68
HDAC6-228ENST00000486227 C19orf18Q8NEA5 215 aa10.81□□□□□ -0.68
HDAC6-228ENST00000486227 ZNF420Q8TAQ5 688 aaPredicted RBP10.81□□□□□ -0.68
HDAC6-228ENST00000486227 HTRA1Q92743 480 aa10.81□□□□□ -0.68
HDAC6-228ENST00000486227 POP5Q969H6 163 aaKnown RBP10.81□□□□□ -0.68
HDAC6-228ENST00000486227 PHF21AQ96BD5 680 aa10.81□□□□□ -0.68
HDAC6-228ENST00000486227 EBPLQ9BY08 206 aa10.81□□□□□ -0.68
HDAC6-228ENST00000486227 AKTIPQ9H8T0 292 aa10.81□□□□□ -0.68
HDAC6-228ENST00000486227 SFXN1Q9H9B4 322 aa10.81□□□□□ -0.68
HDAC6-228ENST00000486227 MTRRQ9UBK8 725 aa10.81□□□□□ -0.68
HDAC6-228ENST00000486227 RAPGEFL1Q9UHV5 662 aa10.81□□□□□ -0.68
HDAC6-228ENST00000486227 KLHL20Q9Y2M5 609 aa10.81□□□□□ -0.68
HDAC6-228ENST00000486227 SAMHD1Q9Y3Z3 626 aaKnown RBP10.81□□□□□ -0.68
HDAC6-228ENST00000486227 CCNKO75909 580 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 DBTP11182 482 aaKnown RBP10.8□□□□□ -0.68
HDAC6-228ENST00000486227 FGF3P11487 239 aaPredicted RBP10.8□□□□□ -0.68
HDAC6-228ENST00000486227 EFNA1P20827 205 aaPredicted RBP10.8□□□□□ -0.68
HDAC6-228ENST00000486227 BMPR1AP36894 532 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 HMGCS1Q01581 520 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 NIPAL4Q0D2K0 466 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 ITPRIPL2Q3MIP1 535 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 PDZK1Q5T2W1 519 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 C22orf39Q6P5X5 142 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 CASP12Q6UXS9 341 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 MMAAQ8IVH4 418 aaKnown RBP10.8□□□□□ -0.68
HDAC6-228ENST00000486227 TRPV1Q8NER1 839 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 ENKURQ8TC29 256 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 NACC2Q96BF6 587 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 MTERF1Q99551 399 aaKnown RBP10.8□□□□□ -0.68
HDAC6-228ENST00000486227 FEM1AQ9BSK4 669 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 EHD3Q9NZN3 535 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 CRNNQ9UBG3 495 aaPredicted RBP10.8□□□□□ -0.68
HDAC6-228ENST00000486227 CNOT6Q9ULM6 557 aaKnown RBP10.8□□□□□ -0.68
HDAC6-228ENST00000486227 COPG1Q9Y678 874 aaKnown RBP10.8□□□□□ -0.68
HDAC6-228ENST00000486227 SDK1Q7Z5N4 2213 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 LOC100506127A0A0U1RQW1 187 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 AQP12BA6NM10 295 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 PORP16435 677 aaPredicted RBP10.8□□□□□ -0.68
HDAC6-228ENST00000486227 BCAP31P51572 246 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 MANFP55145 182 aaKnown RBP10.8□□□□□ -0.68
HDAC6-228ENST00000486227 ADAM17P78536 824 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 RHDQ02161 417 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 TOMM20Q15388 145 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 FAM174BQ3ZCQ3 159 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 LRRC66Q68CR7 880 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 DENND5AQ6IQ26 1287 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 TRIM40Q6P9F5 258 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 AQP12AQ8IXF9 295 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 CENPSQ8N2Z9 138 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 ZNF540Q8NDQ6 660 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 OR4A15Q8NGL6 344 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 MOCOSQ96EN8 888 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 PGAP3Q96FM1 320 aaPredicted RBP10.8□□□□□ -0.68
HDAC6-228ENST00000486227 REXO5Q96IC2 774 aaKnown RBP10.8□□□□□ -0.68
HDAC6-228ENST00000486227 ALG2Q9H553 416 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 FAIMQ9NVQ4 179 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 C1orf109Q9NX04 203 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 MKS1Q9NXB0 559 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 ELOVL2Q9NXB9 296 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 GMPPBQ9Y5P6 360 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 MYO18AQ92614 2054 aaKnown RBP10.8□□□□□ -0.68
HDAC6-228ENST00000486227 ABCA3Q99758 1704 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 A0A1B0GW55 424 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 DNAJA2O60884 412 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 DUX4L2P0CJ85 424 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 DUX4L3P0CJ86 424 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 DUX4L4P0CJ87 422 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 DUX4L5P0CJ88 424 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 DUX4L6P0CJ89 424 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 DUX4L7P0CJ90 424 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 CCR4P51679 360 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 C2orf80Q0P641 193 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 EPGNQ6UW88 154 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 TXNDC5Q8NBS9 432 aaKnown RBP10.8□□□□□ -0.68
HDAC6-228ENST00000486227 PRICKLE1Q96MT3 831 aaPredicted RBP10.8□□□□□ -0.68
HDAC6-228ENST00000486227 PCDHAC1Q9H158 963 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 MRM3Q9HC36 420 aaKnown RBP10.8□□□□□ -0.68
HDAC6-228ENST00000486227 CCDC177Q9NQR7 707 aaPredicted RBP10.8□□□□□ -0.68
HDAC6-228ENST00000486227 DUX4Q9UBX2 424 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 ANGPT4Q9Y264 503 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 BACE2Q9Y5Z0 518 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 EFCAB10A6NFE3 127 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 GLDCP23378 1020 aa10.8□□□□□ -0.68
HDAC6-228ENST00000486227 GDF5P43026 501 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms