RNA–Protein interactions for RNA: ENST00000480104.5

USP11-208, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 697 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-208ENST00000480104 MARC1Q5VT66 337 aa11.31□□□□□ -0.6
USP11-208ENST00000480104 FOXD4L5Q5VV16 416 aaPredicted RBP11.31□□□□□ -0.6
USP11-208ENST00000480104 FCRLBQ6BAA4 426 aa11.31□□□□□ -0.6
USP11-208ENST00000480104 SMYD5Q6GMV2 418 aa11.31□□□□□ -0.6
USP11-208ENST00000480104 HOOK3Q86VS8 718 aa11.31□□□□□ -0.6
USP11-208ENST00000480104 DTWD1Q8N5C7 304 aa11.31□□□□□ -0.6
USP11-208ENST00000480104 TMEM178AQ8NBL3 297 aa11.31□□□□□ -0.6
USP11-208ENST00000480104 OR10Q1Q8NGQ4 319 aa11.31□□□□□ -0.6
USP11-208ENST00000480104 GDAP1Q8TB36 358 aa11.31□□□□□ -0.6
USP11-208ENST00000480104 STT3BQ8TCJ2 826 aa11.31□□□□□ -0.6
USP11-208ENST00000480104 FOXD4L4Q8WXT5 416 aaPredicted RBP11.31□□□□□ -0.6
USP11-208ENST00000480104 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.31□□□□□ -0.6
USP11-208ENST00000480104 ZNF653Q96CK0 615 aa11.31□□□□□ -0.6
USP11-208ENST00000480104 C11orf70Q9BRQ4 267 aa11.31□□□□□ -0.6
USP11-208ENST00000480104 TUBGCP2Q9BSJ2 902 aa11.31□□□□□ -0.6
USP11-208ENST00000480104 CHRNA10Q9GZZ6 450 aa11.31□□□□□ -0.6
USP11-208ENST00000480104 NFKBIL1Q9UBC1 381 aaPredicted RBP11.31□□□□□ -0.6
USP11-208ENST00000480104 FAM8A1Q9UBU6 413 aa11.31□□□□□ -0.6
USP11-208ENST00000480104 AP4E1Q9UPM8 1137 aa11.31□□□□□ -0.6
USP11-208ENST00000480104 MAU2Q9Y6X3 613 aa11.31□□□□□ -0.6
USP11-208ENST00000480104 COLEC10Q9Y6Z7 277 aa11.31□□□□□ -0.6
USP11-208ENST00000480104 ABCA1O95477 2261 aa11.31□□□□□ -0.6
USP11-208ENST00000480104 PRKDCP78527 4128 aaKnown RBP11.31□□□□□ -0.6
USP11-208ENST00000480104 A0A1W2PQ72 361 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 CLDN4O14493 209 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 DSCR3O14972 297 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 NID1P14543 1247 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 CD46P15529 392 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 MMP8P22894 467 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 CMA1P23946 247 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 ARSFP54793 590 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 BPIFB4P59827 614 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 RPL26P61254 145 aaKnown RBP11.3□□□□□ -0.6
USP11-208ENST00000480104 ITKQ08881 620 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 GSE1Q14687 1217 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 SLC25A35Q3KQZ1 300 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 CATSPEREQ5SY80 951 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 C10orf62Q5T681 223 aaPredicted RBP11.3□□□□□ -0.6
USP11-208ENST00000480104 ZNF658Q5TYW1 1059 aaPredicted RBP11.3□□□□□ -0.6
USP11-208ENST00000480104 SPINK14Q6IE38 97 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 ACAD10Q6JQN1 1059 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 WDR59Q6PJI9 974 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 ARHGEF18Q6ZSZ5 1173 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 HIPK1Q86Z02 1210 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 ADGRF3Q8IZF5 1079 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 DNAJC22Q8N4W6 341 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 RASGEF1AQ8N9B8 481 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 FAM98AQ8NCA5 519 aaKnown RBP11.3□□□□□ -0.6
USP11-208ENST00000480104 OR5M3Q8NGP4 307 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 TTC25Q96NG3 672 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 CLSTN2Q9H4D0 955 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 DHX35Q9H5Z1 703 aaKnown RBP11.3□□□□□ -0.6
USP11-208ENST00000480104 XKR8Q9H6D3 395 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 PCDH9Q9HC56 1237 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 RPL26L1Q9UNX3 145 aaKnown RBP11.3□□□□□ -0.6
USP11-208ENST00000480104 PLCL2Q9UPR0 1127 aa11.3□□□□□ -0.6
USP11-208ENST00000480104 MPDZO75970 2070 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 A0A1W2PPR1 153 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 OR2AG2A6NM03 316 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 A8MUI8 341 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 RASGRF2O14827 1237 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 CDC40O60508 579 aaKnown RBP eCLIP11.29□□□□□ -0.6
USP11-208ENST00000480104 MMEP08473 750 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 ZGLP1P0C6A0 271 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 UGT2B7P16662 529 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 CD96P40200 585 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 PEX19P40855 299 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 ZFP36L2P47974 494 aaKnown RBP11.29□□□□□ -0.6
USP11-208ENST00000480104 ATP13A5Q4VNC0 1218 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 ACER2Q5QJU3 275 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 KAZNQ674X7 775 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 HEPHL1Q6MZM0 1159 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 TMEM220Q6QAJ8 160 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 WDR53Q7Z5U6 358 aaPredicted RBP11.29□□□□□ -0.6
USP11-208ENST00000480104 NOP9Q86U38 636 aaKnown RBP11.29□□□□□ -0.6
USP11-208ENST00000480104 ATPAF2Q8N5M1 289 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 SLC30A5Q8TAD4 765 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 NSMCE1Q8WV22 266 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 MIEF2Q96C03 454 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 VPS35Q96QK1 796 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 POLR1EQ9GZS1 481 aaKnown RBP11.29□□□□□ -0.6
USP11-208ENST00000480104 CUTCQ9NTM9 273 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 EURLQ9NYK6 297 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 DNAJC12Q9UKB3 198 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 SHOC2Q9UQ13 582 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 ALG6Q9Y672 507 aa11.29□□□□□ -0.6
USP11-208ENST00000480104 PHF3Q92576 2039 aaKnown RBP11.28□□□□□ -0.6
USP11-208ENST00000480104 A0A0G2JNJ9 132 aa11.28□□□□□ -0.6
USP11-208ENST00000480104 PSMA7O14818 248 aa11.28□□□□□ -0.6
USP11-208ENST00000480104 TFECO14948 347 aaPredicted RBP11.28□□□□□ -0.6
USP11-208ENST00000480104 CNOT4O95628 575 aaKnown RBP11.28□□□□□ -0.6
USP11-208ENST00000480104 SP1P08047 785 aa11.28□□□□□ -0.6
USP11-208ENST00000480104 UGT1A1P22309 533 aa11.28□□□□□ -0.6
USP11-208ENST00000480104 CA4P22748 312 aa11.28□□□□□ -0.6
USP11-208ENST00000480104 CXCR2P25025 360 aa11.28□□□□□ -0.6
USP11-208ENST00000480104 TACR1P25103 407 aa11.28□□□□□ -0.6
USP11-208ENST00000480104 MCM3P25205 808 aa11.28□□□□□ -0.6
USP11-208ENST00000480104 ZNF143P52747 638 aaPredicted RBP11.28□□□□□ -0.6
USP11-208ENST00000480104 AP2B1P63010 937 aa11.28□□□□□ -0.6
USP11-208ENST00000480104 FANCCQ00597 558 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms