RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	SLC9B1	Q4ZJI4	515 aa		10.91	□□□□□ -0.66
APTX-223	ENST00000479656	DUS1L	Q6P1R4	473 aa	Known RBP	10.91	□□□□□ -0.66
APTX-223	ENST00000479656	TTC23L	Q6PF05	361 aa		10.91	□□□□□ -0.66
APTX-223	ENST00000479656	EPGN	Q6UW88	154 aa		10.91	□□□□□ -0.66
APTX-223	ENST00000479656	C6orf89	Q6UWU4	347 aa		10.91	□□□□□ -0.66
APTX-223	ENST00000479656	ARMCX6	Q7L4S7	300 aa		10.91	□□□□□ -0.66
APTX-223	ENST00000479656	RGL4	Q8IZJ4	473 aa		10.91	□□□□□ -0.66
APTX-223	ENST00000479656	FAM174A	Q8TBP5	190 aa		10.91	□□□□□ -0.66
APTX-223	ENST00000479656	MAGEC3	Q8TD91	643 aa		10.91	□□□□□ -0.66
APTX-223	ENST00000479656	FERD3L	Q96RJ6	166 aa		10.91	□□□□□ -0.66
APTX-223	ENST00000479656	SIKE1	Q9BRV8	207 aa		10.91	□□□□□ -0.66
APTX-223	ENST00000479656	TCEAL2	Q9H3H9	227 aa	Predicted RBP	10.91	□□□□□ -0.66
APTX-223	ENST00000479656	WDR55	Q9H6Y2	383 aa	Predicted RBP	10.91	□□□□□ -0.66
APTX-223	ENST00000479656	GPR27	Q9NS67	375 aa		10.91	□□□□□ -0.66
APTX-223	ENST00000479656	ABCF3	Q9NUQ8	709 aa		10.91	□□□□□ -0.66
APTX-223	ENST00000479656	INTS7	Q9NVH2	962 aa	Known RBP	10.91	□□□□□ -0.66
APTX-223	ENST00000479656	DNAJC28	Q9NX36	388 aa		10.91	□□□□□ -0.66
APTX-223	ENST00000479656	TBC1D29	Q9UFV1	150 aa		10.91	□□□□□ -0.66
APTX-223	ENST00000479656	KLF15	Q9UIH9	416 aa		10.91	□□□□□ -0.66
APTX-223	ENST00000479656	PLAGL1	Q9UM63	463 aa		10.91	□□□□□ -0.66
APTX-223	ENST00000479656	TIMM22	Q9Y584	194 aa		10.91	□□□□□ -0.66
APTX-223	ENST00000479656	CCDC163	A0A0D9SF12	145 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	GOLGA8Q	A0A0J9YX86	632 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656		A0A1W2PR77	199 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	GOLGA8O	A6NCC3	632 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	OR52A4P	A6NMU1	304 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	GOLGA8N	F8WBI6	632 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	MYO1C	O00159	1063 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	GIPC1	O14908	333 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	AZIN1	O14977	448 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	SKAP2	O75563	359 aa	Predicted RBP	10.9	□□□□□ -0.66
APTX-223	ENST00000479656	ESRRB	O95718	433 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	EML2	O95834	649 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	ACTR1B	P42025	376 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	CCNG1	P51959	295 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	ERVPABLB-1	P60509	514 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	ACTR1A	P61163	376 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	RACK1	P63244	317 aa	Known RBP	10.9	□□□□□ -0.66
APTX-223	ENST00000479656	CSTF1	Q05048	431 aa	Known RBP	10.9	□□□□□ -0.66
APTX-223	ENST00000479656	LRP8	Q14114	963 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	GRB7	Q14451	532 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	UAP1L1	Q3KQV9	507 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	METTL2B	Q6P1Q9	378 aa	Known RBP	10.9	□□□□□ -0.66
APTX-223	ENST00000479656	SLC30A9	Q6PML9	568 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	GPRIN3	Q6ZVF9	776 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	MILR1	Q7Z6M3	343 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	MTDH	Q86UE4	582 aa	Known RBP	10.9	□□□□□ -0.66
APTX-223	ENST00000479656	NRROS	Q86YC3	692 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	10.9	□□□□□ -0.66
APTX-223	ENST00000479656	MFSD2A	Q8NA29	543 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	OR4F6	Q8NGB9	312 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	OR5K2	Q8NHB8	316 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	ZNF480	Q8WV37	535 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	ATL1	Q8WXF7	558 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	RAD51AP1	Q96B01	352 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	MED8	Q96G25	268 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	ZNF382	Q96SR6	550 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	NRTN	Q99748	197 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	PLCD4	Q9BRC7	762 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	TM9SF3	Q9HD45	589 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	IMP3	Q9NV31	184 aa	Known RBP	10.9	□□□□□ -0.66
APTX-223	ENST00000479656	TRNAU1AP	Q9NX07	287 aa	Known RBP	10.9	□□□□□ -0.66
APTX-223	ENST00000479656	SCHIP1	Q9P0W5	487 aa	Predicted RBP	10.9	□□□□□ -0.66
APTX-223	ENST00000479656	DNAJC15	Q9Y5T4	150 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	DGKB	Q9Y6T7	804 aa		10.9	□□□□□ -0.66
APTX-223	ENST00000479656	ZFC3H1	O60293	1989 aa	Known RBP	10.9	□□□□□ -0.66
APTX-223	ENST00000479656	PRAMEF33	A0A0G2JMD5	474 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	CCT8L1P	A6NM43	557 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	CRCP	O75575	148 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	OTC	P00480	354 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	TDGF1	P13385	188 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	EPOR	P19235	508 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	EPHA3	P29320	983 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	PKNOX1	P55347	436 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	BTK	Q06187	659 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	SRSF5	Q13243	272 aa	Known RBP	10.89	□□□□□ -0.67
APTX-223	ENST00000479656	TUBB3	Q13509	450 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	FASTK	Q14296	549 aa	Known RBP	10.89	□□□□□ -0.67
APTX-223	ENST00000479656	LETMD1	Q6P1Q0	360 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	ABRAXAS1	Q6UWZ7	409 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	LRRC70	Q7Z2Q7	622 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	ALYREF	Q86V81	257 aa	Known RBP	10.89	□□□□□ -0.67
APTX-223	ENST00000479656	THOC6	Q86W42	341 aa	Known RBP	10.89	□□□□□ -0.67
APTX-223	ENST00000479656	DCP2	Q8IU60	420 aa	Known RBP	10.89	□□□□□ -0.67
APTX-223	ENST00000479656	C1orf210	Q8IVY1	113 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	DCUN1D3	Q8IWE4	304 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	SYTL1	Q8IYJ3	562 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	TBC1D21	Q8IYX1	336 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	MAML2	Q8IZL2	1156 aa	Predicted RBP	10.89	□□□□□ -0.67
APTX-223	ENST00000479656	AFAP1L2	Q8N4X5	818 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	C2orf73	Q8N5S3	287 aa	Predicted RBP	10.89	□□□□□ -0.67
APTX-223	ENST00000479656	FITM2	Q8N6M3	262 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	CDYL2	Q8N8U2	506 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	TMEM105	Q8N8V8	129 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	SNX31	Q8N9S9	440 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	C1orf216	Q8TAB5	229 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	FAR2	Q96K12	515 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	IL17F	Q96PD4	163 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	OR52B2	Q96RD2	323 aa		10.89	□□□□□ -0.67
APTX-223	ENST00000479656	DUSP15	Q9H1R2	295 aa	Predicted RBP	10.89	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms