RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 IKZF3Q9UKT9 509 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 BOLA1Q9Y3E2 137 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 MUC6Q6W4X9 2439 aa4.89□□□□□ -1.63
CCDC39-204ENST00000476379 SCN5AQ14524 2016 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP4.88□□□□□ -1.63
CCDC39-204ENST00000476379 IGKV6-21A0A0C4DH24 114 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 SMIM35A0A1B0GVV1 85 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 CKMT1AP12532 417 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 IGFBP5P24593 272 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 ARNTP27540 789 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 RPIAP49247 311 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 PTPN5P54829 565 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 GALNT2Q10471 571 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 CNTN1Q12860 1018 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 TCEAL1Q15170 157 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 CCDC157Q569K6 752 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 CLEC12AQ5QGZ9 265 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 LETMD1Q6P1Q0 360 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 SH2D5Q6ZV89 423 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 UBE2R2Q712K3 238 aaPredicted RBP4.88□□□□□ -1.63
CCDC39-204ENST00000476379 GPR180Q86V85 440 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 TRIM48Q8IWZ4 208 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 CENPSQ8N2Z9 138 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 ZFP41Q8N8Y5 198 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 OSCP1Q8WVF1 389 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 PHF21AQ96BD5 680 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 CENPNQ96H22 339 aaPredicted RBP4.88□□□□□ -1.63
CCDC39-204ENST00000476379 HHIPL1Q96JK4 782 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 TCF25Q9BQ70 676 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 INPP5KQ9BT40 448 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 CRISPLD1Q9H336 500 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 RNF167Q9H6Y7 350 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 MIEF1Q9NQG6 463 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 KRT84Q9NSB2 600 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 PTTG2Q9NZH5 202 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 VAPAQ9P0L0 249 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 ERVK-18Q9QC07 812 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 RIMS3Q9UJD0 308 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 RAB26Q9ULW5 256 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 ANGPT4Q9Y264 503 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 ASB3Q9Y575 518 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 COL12A1Q99715 3063 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 MED12Q93074 2177 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 A0A1W2PRU2 124 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 CPSF4LA6NMK7 179 aaKnown RBP4.88□□□□□ -1.63
CCDC39-204ENST00000476379 FAM227AF5H4B4 570 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 RTCAO00442 366 aaKnown RBP4.88□□□□□ -1.63
CCDC39-204ENST00000476379 IFRD1O00458 451 aaPredicted RBP4.88□□□□□ -1.63
CCDC39-204ENST00000476379 STK25O00506 426 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 BCKDKO14874 412 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 PSMD3O43242 534 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 TNFRSF21O75509 655 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 S1PR4O95977 384 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 GSRP00390 522 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 C1QCP02747 245 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 LCKP06239 509 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 PABPC4LP0CB38 370 aaKnown RBP4.88□□□□□ -1.63
CCDC39-204ENST00000476379 IDO1P14902 403 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 ZNF7P17097 686 aaPredicted RBP4.88□□□□□ -1.63
CCDC39-204ENST00000476379 IMPDH1P20839 514 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 CCNCP24863 283 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 SLC7A1P30825 629 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 SSTR4P31391 388 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 CSKP41240 450 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 NR4A2P43354 598 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 SGSHP51688 502 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 CLCN2P51788 898 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 MLLT6P55198 1093 aaPredicted RBP4.88□□□□□ -1.63
CCDC39-204ENST00000476379 TFF2Q03403 129 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 HSPB3Q12988 150 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 OTUD1Q5VV17 481 aaPredicted RBP4.88□□□□□ -1.63
CCDC39-204ENST00000476379 SHFQ7M4L6 423 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 ZNF467Q7Z7K2 595 aaPredicted RBP4.88□□□□□ -1.63
CCDC39-204ENST00000476379 SCD5Q86SK9 330 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 MON1AQ86VX9 555 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 MCFD2Q8NI22 146 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 RAB8BQ92930 207 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 FAR2Q96K12 515 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 PBX4Q9BYU1 374 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 NUAK2Q9H093 628 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 RMI1Q9H9A7 625 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 ZNF556Q9HAH1 456 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 SLC28A3Q9HAS3 691 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 IGSF5Q9NSI5 407 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 UCKL1Q9NWZ5 548 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 BLOC1S6Q9UL45 172 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 CEP295Q9C0D2 2601 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 CXCR6O00574 342 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 DPYSL4O14531 572 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 GRM6O15303 877 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 SMAD6O43541 496 aaKnown RBP4.88□□□□□ -1.63
CCDC39-204ENST00000476379 LZTS3O60299 673 aaPredicted RBP4.88□□□□□ -1.63
CCDC39-204ENST00000476379 PSIP1O75475 530 aaKnown RBP4.88□□□□□ -1.63
CCDC39-204ENST00000476379 MYO1DO94832 1006 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 KRT75O95678 551 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 SBK3P0C264 359 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 MATN1P21941 496 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 TCEA1P23193 301 aaKnown RBP4.88□□□□□ -1.63
CCDC39-204ENST00000476379 JAK1P23458 1154 aa4.88□□□□□ -1.63
CCDC39-204ENST00000476379 SLC6A2P23975 617 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms