RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 SPATC1LQ9H0A9 340 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 KCNK15Q9H427 330 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 DENND2DQ9H6A0 471 aaPredicted RBP2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 LARSQ9P2J5 1176 aaKnown RBP2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 CRNNQ9UBG3 495 aaPredicted RBP2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 HACL1Q9UJ83 578 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 PPIEQ9UNP9 301 aaKnown RBP2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 ZNF148Q9UQR1 794 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 ABCA7Q8IZY2 2146 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 KAT6BQ8WYB5 2073 aa2.78□□□□□ -1.96
CCDC88A-212ENST00000474059 PRR32B1ATL7 298 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 TMEM189-UBE2V1I3L0A0 370 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 DKC1O60832 514 aaKnown RBP eCLIP2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 TFAP2AP05549 437 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 ABCB1P08183 1280 aaPredicted RBP2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 EPHA2P29317 976 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 CAPZA2P47755 286 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 ARSEP51690 589 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 CTSCP53634 463 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 UBE2V1Q13404 147 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 KRT33BQ14525 404 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 KYNUQ16719 465 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 GTDC1Q4AE62 458 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 FAM98BQ52LJ0 330 aaKnown RBP2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 ERMARDQ5T6L9 678 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 NDUFAF5Q5TEU4 345 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 ARHGEF16Q5VV41 709 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 DHRS7BQ6IAN0 325 aaPredicted RBP2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 ZNF343Q6P1L6 599 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 Q6ZSR9 355 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 ZNF534Q76KX8 674 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 PLPPR4Q7Z2D5 763 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 HAUS6Q7Z4H7 955 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 ADIPOR2Q86V24 386 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 GALNT13Q8IUC8 556 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 PM20D2Q8IYS1 436 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 GBGT1Q8N5D6 347 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 GCSAMQ8N6F7 178 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 TBC1D16Q8TBP0 767 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 LPGAT1Q92604 370 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 PTERQ96BW5 349 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 OMA1Q96E52 524 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 PGAP3Q96FM1 320 aaPredicted RBP2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 RADILQ96JH8 1075 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 DGAT2Q96PD7 388 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 RTP3Q9BQQ7 232 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 HGH1Q9BTY7 390 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 CCDC106Q9BWC9 280 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 MMP27Q9H306 513 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 CHMP1AQ9HD42 196 aaPredicted RBP2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 TAB2Q9NYJ8 693 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 TAS2R14Q9NYV8 317 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 GDE1Q9NZC3 331 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 GIMAP2Q9UG22 337 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 AMACRQ9UHK6 382 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 ANAPC2Q9UJX6 822 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 WBP11Q9Y2W2 641 aaKnown RBP2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 TRPV2Q9Y5S1 764 aa2.77□□□□□ -1.97
CCDC88A-212ENST00000474059 OR2M5A3KFT3 312 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 NDUFS4O43181 175 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 ZBTB43O43298 467 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 TBX10O75333 385 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 CREG1O75629 220 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 PSMD10O75832 226 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 BMP10O95393 424 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 DUS4LO95620 317 aaKnown RBP2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 CEBPBP17676 345 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 NKX2-1P43699 371 aaPredicted RBP2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 CD81P60033 236 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 SIRPAP78324 504 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 SNTB1Q13884 538 aaKnown RBP2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 C9orf152Q5JTZ5 239 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 ZDHHC20Q5W0Z9 365 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 PAQR6Q6TCH4 344 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 IL27RAQ6UWB1 636 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 Q6ZR54 194 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 ISCA2Q86U28 154 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 CEP57Q86XR8 500 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 FBXO39Q8N4B4 442 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 SLC5A8Q8N695 610 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 C1orf52Q8N6N3 182 aaKnown RBP2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 TDRD5Q8NAT2 981 aaKnown RBP2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 ZFAND2BQ8WV99 257 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 TMEM143Q96AN5 459 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 SLC22A12Q96S37 553 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 BAG1Q99933 345 aaPredicted RBP2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 RHNO1Q9BSD3 238 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 OR10A4Q9H209 315 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 PELI2Q9HAT8 420 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 HAO2Q9NYQ3 351 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 RCC2Q9P258 522 aaKnown RBP2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 C5AR2Q9P296 337 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 WDR35Q9P2L0 1181 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 CFDP1Q9UEE9 299 aaPredicted RBP2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 EPHA6Q9UF33 1036 aa2.76□□□□□ -1.97
CCDC88A-212ENST00000474059 ZNF541Q9H0D2 1346 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 IGLV7-46A0A075B6I9 117 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 A0A087WW49 117 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 TCRBV21S2A2A0A5A6 115 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 URADA6NGE7 173 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms