RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 ELMSAN1Q6PJG2 1045 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 TXNDC11Q6PKC3 985 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 ASZ1Q8WWH4 475 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 ASB9Q96DX5 294 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 RERGLQ9H628 205 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 CTPS2Q9NRF8 586 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 WDR70Q9NW82 654 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 VAPAQ9P0L0 249 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 ZDBF2Q9HCK1 2354 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 ZNF197O14709 1029 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 KPNA5O15131 536 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 SLC16A8O95907 504 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 ALBP02768 609 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 CRATP43155 626 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 CNTN1Q12860 1018 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 CHSY3Q70JA7 882 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 RELTQ969Z4 430 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 RAD9AQ99638 391 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 HERC2P3Q9BVR0 1158 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 DGCR6LQ9BY27 220 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 AMBNQ9NP70 447 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 KCNK6Q9Y257 313 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 ZNF451Q9Y4E5 1061 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 HEMK1Q9Y5R4 338 aaPredicted RBP13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 SPTBN2O15020 2390 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 BPTFQ12830 3046 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 OR7A17O14581 309 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 B4GAT1O43505 415 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 CXCL10P02778 98 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 C1SP09871 688 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 TNFRSF1BP20333 461 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 POU1F1P28069 291 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 PRMT2P55345 433 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 TMEM115Q12893 351 aaPredicted RBP13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 NFE2L1Q14494 772 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 UGT3A2Q3SY77 523 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 CLECL1Q8IZS7 167 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 SLC13A3Q8WWT9 602 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 L3HYPDHQ96EM0 354 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 ASB2Q96Q27 587 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 CD244Q9BZW8 370 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 IL23AQ9NPF7 189 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 TM7SF3Q9NS93 570 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 MYO16Q9Y6X6 1858 aa13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 RP1L1Q8IWN7 2480 aaPredicted RBP13.41□□□□□ -0.26
CCDC88A-211ENST00000471947 EVPLLA8MZ36 301 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 TAPBPO15533 448 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 MYO1DO94832 1006 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 CATP04040 527 aaKnown RBP13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 CYP2A6P11509 494 aaPredicted RBP13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 GSTT1P30711 240 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 KANK2Q63ZY3 851 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 GPR180Q86V85 440 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 FRMD1Q8N878 549 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 RHEBL1Q8TAI7 183 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 PROKR1Q8TCW9 393 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 LRRC3BQ96PB8 259 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 MRPL40Q9NQ50 206 aaKnown RBP13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 PAPOLBQ9NRJ5 636 aaKnown RBP13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 UBAP1Q9NZ09 502 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 IL36AQ9UHA7 158 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 VWA8A3KMH1 1905 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 A0A1W2PP18 115 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 STK25O00506 426 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 CASQ2O14958 399 aaPredicted RBP13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 NME6O75414 186 aaPredicted RBP13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 PRKD3O94806 890 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 CST1P01037 141 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 POU2F1P14859 743 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 CATSPEREQ5SY80 951 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 KLHDC10Q6PID8 442 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 C1orf52Q8N6N3 182 aaKnown RBP13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 OR14C36Q8NHC7 312 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 HIC2Q96JB3 615 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 TMEM121BQ9BXQ6 578 aaPredicted RBP13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 RPL26L1Q9UNX3 145 aaKnown RBP13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 SPEGQ15772 3267 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 PRRT4C9JH25 899 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 MANBAO00462 879 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 RPS17P08708 135 aaKnown RBP13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 PRDX6P30041 224 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 PRKCQQ04759 706 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 KIAA2013Q8IYS2 634 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 CMTR2Q8IYT2 770 aaKnown RBP13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 FAM86B1Q8N7N1 296 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 ZNF740Q8NDX6 193 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 MAL2Q969L2 176 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 PPP3R2Q96LZ3 170 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 ROGDIQ9GZN7 287 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 RIBC2Q9H4K1 309 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 DNAJC11Q9NVH1 559 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 GPSM3Q9Y4H4 160 aa13.4□□□□□ -0.26
CCDC88A-211ENST00000471947 C7orf72A4D263 438 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 GLOD5A6NK44 160 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 E7EQ34 232 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 PGRP06401 933 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 ACP5P13686 325 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 RHDQ02161 417 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 ZFP1Q6P2D0 407 aa13.39□□□□□ -0.27
CCDC88A-211ENST00000471947 BLOC1S3Q6QNY0 202 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms