RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 MAGEB5Q9BZ81 275 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 TOR3AQ9H497 397 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 SLC32A1Q9H598 525 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 TASP1Q9H6P5 420 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 POLG2Q9UHN1 485 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF711Q9Y462 761 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 KDM4FA0A1W2PPD8 638 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 SGK494L7N484 410 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 B4GALT5O43286 388 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 CXCL8P10145 99 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF140P52738 457 aaPredicted RBP5.24□□□□□ -1.57
SYNE1-220ENST00000471834 PLIN5Q00G26 463 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 OCA2Q04671 838 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 MRPL28Q13084 256 aaKnown RBP5.24□□□□□ -1.57
SYNE1-220ENST00000471834 TMEM132DQ14C87 1099 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 TRIM16LQ309B1 348 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 HORMAD1Q86X24 394 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 PTOV1Q86YD1 416 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 PGBD5Q8N414 524 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 LPCAT1Q8NF37 534 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 LYSMD1Q96S90 227 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 IKZF5Q9H5V7 419 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 VAPAQ9P0L0 249 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 ANK1P16157 1881 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 CARNS1A5YM72 827 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 NEMP2A6NFY4 417 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 CCDC154A6NI56 674 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 E2F3O00716 465 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 HYAL3O43820 417 aaPredicted RBP5.23□□□□□ -1.57
SYNE1-220ENST00000471834 F11P03951 625 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 TALDO1P37837 337 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 CLCN3P51790 818 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 LBX1P52954 281 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 GEMP55040 296 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 CASP6P55212 293 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 ARHGAP1Q07960 439 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 SEMA3AQ14563 771 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 RGMBQ6NW40 437 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 TAF2Q6P1X5 1199 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 DSG4Q86SJ6 1040 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 OOSP2Q86WS3 158 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 IQCF2Q8IXL9 164 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 RAVER1Q8IY67 606 aaKnown RBP5.23□□□□□ -1.57
SYNE1-220ENST00000471834 NLGN4XQ8N0W4 816 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 ATPAF2Q8N5M1 289 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 ASIC4Q96FT7 647 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 HPDLQ96IR7 371 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 KCNH6Q9H252 994 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 SLA2Q9H6Q3 261 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 FANCEQ9HB96 536 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 NEUROD4Q9HD90 331 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 KLK14Q9P0G3 267 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 CARD8Q9Y2G2 431 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 KCNK7Q9Y2U2 307 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 POLR1CO15160 346 aaPredicted RBP5.23□□□□□ -1.57
SYNE1-220ENST00000471834 PTPN5P54829 565 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 EEF1A2Q05639 463 aaKnown RBP5.23□□□□□ -1.57
SYNE1-220ENST00000471834 LRRC74AQ0VAA2 488 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 NFE2Q16621 373 aaPredicted RBP5.23□□□□□ -1.57
SYNE1-220ENST00000471834 PGS1Q32NB8 556 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 EML3Q32P44 896 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 AGAP9Q5VTM2 703 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 LRRC71Q8N4P6 559 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 CAPSLQ8WWF8 208 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 ARPC5LQ9BPX5 153 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 MARVELD1Q9BSK0 173 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 SLC25A19Q9HC21 320 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 CFL2Q9Y281 166 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 KIAA1671Q9BY89 1806 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 TMEM189-UBE2V1I3L0A0 370 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 CD37P11049 281 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 NMBRP28336 390 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 AP2S1P53680 142 aaPredicted RBP5.23□□□□□ -1.57
SYNE1-220ENST00000471834 PON2Q15165 354 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 RBM20Q5T481 1227 aaKnown RBP5.23□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF605Q86T29 641 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 BEND7Q8N7W2 519 aaPredicted RBP5.23□□□□□ -1.57
SYNE1-220ENST00000471834 RTL3Q8N8U3 475 aaKnown RBP5.23□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF280CQ8ND82 737 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 FLCNQ8NFG4 579 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 OR6P1Q8NGX9 317 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 ADAM32Q8TC27 787 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 DEDD2Q8WXF8 326 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 FUBP1Q96AE4 644 aaKnown RBP5.23□□□□□ -1.57
SYNE1-220ENST00000471834 SPACA7Q96KW9 195 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 APOL5Q9BWW9 433 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 NT5DC2Q9H857 520 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 TRIM39Q9HCM9 518 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 THSD1Q9NS62 852 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 GPATCH2LQ9NWQ4 482 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 TNPO3Q9Y5L0 923 aaKnown RBP5.23□□□□□ -1.57
SYNE1-220ENST00000471834 AGRPO00253 132 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 INPP4BO15327 924 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 USP2O75604 605 aaPredicted RBP5.23□□□□□ -1.57
SYNE1-220ENST00000471834 PCBP3P57721 371 aaKnown RBP5.23□□□□□ -1.57
SYNE1-220ENST00000471834 COPZ1P61923 177 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 RHAGQ02094 409 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 CLCA4Q14CN2 919 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 DGUOKQ16854 277 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 Q5BKY6 102 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms