RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 AMZ1Q400G9 498 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 TAF1BQ53T94 588 aaPredicted RBP14.35□□□□□ -0.11
COL9A3-209ENST00000469852 CEP85LQ5SZL2 805 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 LRIG3Q6UXM1 1119 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 TBC1D1Q86TI0 1168 aaPredicted RBP14.35□□□□□ -0.11
COL9A3-209ENST00000469852 RIBC1Q8N443 379 aaPredicted RBP14.35□□□□□ -0.11
COL9A3-209ENST00000469852 C2orf73Q8N5S3 287 aaPredicted RBP14.35□□□□□ -0.11
COL9A3-209ENST00000469852 LINC01555Q8NAE3 123 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 AVL9Q8NBF6 648 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 FBXO15Q8NCQ5 510 aaPredicted RBP14.35□□□□□ -0.11
COL9A3-209ENST00000469852 ZFPM2Q8WW38 1151 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 LCN9Q8WX39 176 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 SH3KBP1Q96B97 665 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 SLC12A9Q9BXP2 914 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.35□□□□□ -0.11
COL9A3-209ENST00000469852 TFB2MQ9H5Q4 396 aaKnown RBP14.35□□□□□ -0.11
COL9A3-209ENST00000469852 ARGLU1Q9NWB6 273 aaPredicted RBP14.35□□□□□ -0.11
COL9A3-209ENST00000469852 UTP6Q9NYH9 597 aaKnown RBP14.35□□□□□ -0.11
COL9A3-209ENST00000469852 TMEM9Q9P0T7 183 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 POLG2Q9UHN1 485 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 UNC13CQ8NB66 2214 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 OR6C74A6NCV1 312 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 NTN3O00634 580 aaPredicted RBP14.34□□□□□ -0.11
COL9A3-209ENST00000469852 SLC16A5O15375 505 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 OPA1O60313 960 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 UBXN7O94888 489 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 KLHL2O95198 593 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 SYF2O95926 243 aaKnown RBP14.34□□□□□ -0.11
COL9A3-209ENST00000469852 MT-ND3P03897 115 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 RPN2P04844 631 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 PEBP1P30086 187 aaKnown RBP14.34□□□□□ -0.11
COL9A3-209ENST00000469852 SLC26A3P40879 764 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 CCNFP41002 786 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 EPHA4P54764 986 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 SP140Q13342 867 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 FASTKQ14296 549 aaKnown RBP14.34□□□□□ -0.11
COL9A3-209ENST00000469852 ZXDCQ2QGD7 858 aaPredicted RBP14.34□□□□□ -0.11
COL9A3-209ENST00000469852 USP53Q70EK8 1073 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 ISCA2Q86U28 154 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 TRABD2AQ86V40 505 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 ADGRF3Q8IZF5 1079 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 OR9A1PQ8NGU1 263 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 RAD51AP1Q96B01 352 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 NUDT22Q9BRQ3 303 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 LRRN3Q9H3W5 708 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 ALG9Q9H6U8 611 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 SYNDIG1Q9H7V2 258 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 RDH14Q9HBH5 336 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 PARVBQ9HBI1 364 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 EVA1BQ9NVM1 165 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 SPHK1Q9NYA1 384 aa14.34□□□□□ -0.11
COL9A3-209ENST00000469852 SNRNP200O75643 2136 aaKnown RBP14.33□□□□□ -0.11
COL9A3-209ENST00000469852 AGPSO00116 658 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 SASH3O75995 380 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 GUCA1CO95843 209 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 SLC16A8O95907 504 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 PROS1P07225 676 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 HOXB3P14651 431 aaPredicted RBP14.33□□□□□ -0.12
COL9A3-209ENST00000469852 CREB1P16220 341 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 CYP2A7P20853 494 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 KCNA4P22459 653 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 IMPA1P29218 277 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 CAPZBP47756 277 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 GFERP55789 205 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 ATP6V0D1P61421 351 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 INSM1Q01101 510 aaPredicted RBP14.33□□□□□ -0.12
COL9A3-209ENST00000469852 DHRS13Q6UX07 377 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 CDHR3Q6ZTQ4 885 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 TAX1BP1Q86VP1 789 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 AMIGO1Q86WK6 493 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 C4orf33Q8N1A6 199 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 PPFIBP2Q8ND30 876 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 OR10G6Q8NH81 332 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 ZNF480Q8WV37 535 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 ANKRD7Q92527 254 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 KIAA1191Q96A73 305 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 ATOH8Q96SQ7 321 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 TWSG1Q9GZX9 223 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 C12orf65Q9H3J6 166 aaKnown RBP14.33□□□□□ -0.12
COL9A3-209ENST00000469852 SRMSQ9H3Y6 488 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 NMRAL1Q9HBL8 299 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 ZNF446Q9NWS9 450 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 NOVA2Q9UNW9 492 aaKnown RBP14.33□□□□□ -0.12
COL9A3-209ENST00000469852 OARD1Q9Y530 152 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 ZFHX4Q86UP3 3567 aa14.33□□□□□ -0.12
COL9A3-209ENST00000469852 OR5K3A6NET4 321 aa14.32□□□□□ -0.12
COL9A3-209ENST00000469852 SBK3P0C264 359 aa14.32□□□□□ -0.12
COL9A3-209ENST00000469852 ERGP11308 486 aa14.32□□□□□ -0.12
COL9A3-209ENST00000469852 AMD1P17707 334 aa14.32□□□□□ -0.12
COL9A3-209ENST00000469852 KRT4P19013 534 aa14.32□□□□□ -0.12
COL9A3-209ENST00000469852 POLR2CP19387 275 aaPredicted RBP14.32□□□□□ -0.12
COL9A3-209ENST00000469852 MPSTP25325 297 aa14.32□□□□□ -0.12
COL9A3-209ENST00000469852 MAP4P27816 1152 aaKnown RBP14.32□□□□□ -0.12
COL9A3-209ENST00000469852 RAB28P51157 221 aa14.32□□□□□ -0.12
COL9A3-209ENST00000469852 PDX1P52945 283 aa14.32□□□□□ -0.12
COL9A3-209ENST00000469852 GPLD1P80108 840 aa14.32□□□□□ -0.12
COL9A3-209ENST00000469852 ILKQ13418 452 aa14.32□□□□□ -0.12
COL9A3-209ENST00000469852 TGFBIQ15582 683 aa14.32□□□□□ -0.12
COL9A3-209ENST00000469852 FAM83EQ2M2I3 478 aa14.32□□□□□ -0.12
COL9A3-209ENST00000469852 C18orf21Q32NC0 220 aaPredicted RBP14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms