RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 RHBDD2Q6NTF9 364 aa18.48■□□□□ 0.55
COL9A3-206ENST00000466532 GLIS1Q8NBF1 620 aa18.48■□□□□ 0.55
COL9A3-206ENST00000466532 GALNT11Q8NCW6 608 aa18.48■□□□□ 0.55
COL9A3-206ENST00000466532 OR4L1Q8NH43 312 aa18.48■□□□□ 0.55
COL9A3-206ENST00000466532 SGSM3Q96HU1 749 aa18.48■□□□□ 0.55
COL9A3-206ENST00000466532 RANBP9Q96S59 729 aa18.48■□□□□ 0.55
COL9A3-206ENST00000466532 CHRNA10Q9GZZ6 450 aa18.48■□□□□ 0.55
COL9A3-206ENST00000466532 GPR83Q9NYM4 423 aa18.48■□□□□ 0.55
COL9A3-206ENST00000466532 GPN3Q9UHW5 284 aaPredicted RBP18.48■□□□□ 0.55
COL9A3-206ENST00000466532 RIMKLBQ9ULI2 386 aa18.48■□□□□ 0.55
COL9A3-206ENST00000466532 ZNF148Q9UQR1 794 aa18.48■□□□□ 0.55
COL9A3-206ENST00000466532 PRRC2CQ9Y520 2896 aaKnown RBP18.48■□□□□ 0.55
COL9A3-206ENST00000466532 RP1L1Q8IWN7 2480 aaPredicted RBP18.47■□□□□ 0.55
COL9A3-206ENST00000466532 BLACEA4D250 179 aa18.47■□□□□ 0.55
COL9A3-206ENST00000466532 ZSCAN9O15535 394 aaPredicted RBP18.47■□□□□ 0.55
COL9A3-206ENST00000466532 KLF7O75840 302 aaPredicted RBP18.47■□□□□ 0.55
COL9A3-206ENST00000466532 CTSBP07858 339 aa18.47■□□□□ 0.55
COL9A3-206ENST00000466532 ADRA1DP25100 572 aa18.47■□□□□ 0.55
COL9A3-206ENST00000466532 PEBP1P30086 187 aaKnown RBP18.47■□□□□ 0.55
COL9A3-206ENST00000466532 KIR2DS3Q14952 304 aa18.47■□□□□ 0.55
COL9A3-206ENST00000466532 SLC5A12Q1EHB4 618 aa18.47■□□□□ 0.55
COL9A3-206ENST00000466532 FASTKD1Q53R41 847 aaKnown RBP18.47■□□□□ 0.55
COL9A3-206ENST00000466532 HPS6Q86YV9 775 aa18.47■□□□□ 0.55
COL9A3-206ENST00000466532 ZNF655Q8N720 491 aaPredicted RBP18.47■□□□□ 0.55
COL9A3-206ENST00000466532 OR6P1Q8NGX9 317 aa18.47■□□□□ 0.55
COL9A3-206ENST00000466532 ZNF778Q96MU6 729 aa18.47■□□□□ 0.55
COL9A3-206ENST00000466532 GBP5Q96PP8 586 aa18.47■□□□□ 0.55
COL9A3-206ENST00000466532 MFRPQ9BY79 579 aa18.47■□□□□ 0.55
COL9A3-206ENST00000466532 FRMD8P1Q9BZ68 369 aaPredicted RBP18.47■□□□□ 0.55
COL9A3-206ENST00000466532 TXLNGQ9NUQ3 528 aa18.47■□□□□ 0.55
COL9A3-206ENST00000466532 IRAK4Q9NWZ3 460 aa18.47■□□□□ 0.55
COL9A3-206ENST00000466532 LUZP4Q9P127 313 aa18.47■□□□□ 0.55
COL9A3-206ENST00000466532 DHCR7Q9UBM7 475 aaKnown RBP18.47■□□□□ 0.55
COL9A3-206ENST00000466532 PTRH2Q9Y3E5 179 aaKnown RBP18.47■□□□□ 0.55
COL9A3-206ENST00000466532 MAP4K5Q9Y4K4 846 aa18.47■□□□□ 0.55
COL9A3-206ENST00000466532 USP9YO00507 2555 aaPredicted RBP18.47■□□□□ 0.55
COL9A3-206ENST00000466532 DOCK10Q96BY6 2186 aa18.47■□□□□ 0.55
COL9A3-206ENST00000466532 CCR7P32248 378 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 FOLR3P41439 243 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 PRAMEP78395 509 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 DCDP81605 110 aaKnown RBP18.46■□□□□ 0.55
COL9A3-206ENST00000466532 ACVR1Q04771 509 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 HSPA14Q0VDF9 509 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 RAPSNQ13702 412 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 SEMA3AQ14563 771 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 SLC9A5Q14940 896 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 DNAJC21Q5F1R6 531 aaKnown RBP18.46■□□□□ 0.55
COL9A3-206ENST00000466532 JMJD6Q6NYC1 403 aaPredicted RBP18.46■□□□□ 0.55
COL9A3-206ENST00000466532 ZNF534Q76KX8 674 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 NLRP9Q7RTR0 991 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 MRGPREQ86SM8 312 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 PRUNE1Q86TP1 453 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 SLC22A15Q8IZD6 547 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 RNF10Q8N5U6 811 aaKnown RBP18.46■□□□□ 0.55
COL9A3-206ENST00000466532 PROKR1Q8TCW9 393 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 C1orf54Q8WWF1 131 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 IP6K3Q96PC2 410 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 PSMG3-AS1Q96PY0 264 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 TSSK1BQ9BXA7 367 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 AP1M1Q9BXS5 423 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 CASS4Q9NQ75 786 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 RAB6BQ9NRW1 208 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 IFT80Q9P2H3 777 aaPredicted RBP18.46■□□□□ 0.55
COL9A3-206ENST00000466532 NDOR1Q9UHB4 597 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 SRPK3Q9UPE1 567 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 PLCL2Q9UPR0 1127 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 TCAF1Q9Y4C2 921 aa18.46■□□□□ 0.55
COL9A3-206ENST00000466532 ETS1P14921 441 aa18.45■□□□□ 0.54
COL9A3-206ENST00000466532 PKLRP30613 574 aa18.45■□□□□ 0.54
COL9A3-206ENST00000466532 PPARGP37231 505 aaPredicted RBP18.45■□□□□ 0.54
COL9A3-206ENST00000466532 RAB28P51157 221 aa18.45■□□□□ 0.54
COL9A3-206ENST00000466532 SNX1Q13596 522 aa18.45■□□□□ 0.54
COL9A3-206ENST00000466532 SSPNQ14714 243 aa18.45■□□□□ 0.54
COL9A3-206ENST00000466532 KYNUQ16719 465 aa18.45■□□□□ 0.54
COL9A3-206ENST00000466532 TLDC1Q6P9B6 456 aa18.45■□□□□ 0.54
COL9A3-206ENST00000466532 SLC13A5Q86YT5 568 aaPredicted RBP18.45■□□□□ 0.54
COL9A3-206ENST00000466532 VRK3Q8IV63 474 aa18.45■□□□□ 0.54
COL9A3-206ENST00000466532 FAM20CQ8IXL6 584 aa18.45■□□□□ 0.54
COL9A3-206ENST00000466532 DNAJC22Q8N4W6 341 aa18.45■□□□□ 0.54
COL9A3-206ENST00000466532 RBMXL3Q8N7X1 1067 aaKnown RBP18.45■□□□□ 0.54
COL9A3-206ENST00000466532 LKAAEAR1Q8TD35 194 aa18.45■□□□□ 0.54
COL9A3-206ENST00000466532 SMAD5Q99717 465 aaKnown RBP18.45■□□□□ 0.54
COL9A3-206ENST00000466532 CARD6Q9BX69 1037 aa18.45■□□□□ 0.54
COL9A3-206ENST00000466532 SLAMF7Q9NQ25 335 aa18.45■□□□□ 0.54
COL9A3-206ENST00000466532 CDYLQ9Y232 598 aa18.45■□□□□ 0.54
COL9A3-206ENST00000466532 ICE1Q9Y2F5 2266 aa18.44■□□□□ 0.54
COL9A3-206ENST00000466532 IQCF5A8MTL0 148 aa18.44■□□□□ 0.54
COL9A3-206ENST00000466532 APRTP07741 180 aa18.44■□□□□ 0.54
COL9A3-206ENST00000466532 CD63P08962 238 aa18.44■□□□□ 0.54
COL9A3-206ENST00000466532 MAGP20916 626 aa18.44■□□□□ 0.54
COL9A3-206ENST00000466532 INPP5JQ15735 1006 aaPredicted RBP18.44■□□□□ 0.54
COL9A3-206ENST00000466532 PRR30Q53SZ7 412 aaPredicted RBP18.44■□□□□ 0.54
COL9A3-206ENST00000466532 FHL5Q5TD97 284 aa18.44■□□□□ 0.54
COL9A3-206ENST00000466532 SLC6A19Q695T7 634 aa18.44■□□□□ 0.54
COL9A3-206ENST00000466532 LDB1Q86U70 411 aaPredicted RBP18.44■□□□□ 0.54
COL9A3-206ENST00000466532 KRT222Q8N1A0 295 aa18.44■□□□□ 0.54
COL9A3-206ENST00000466532 CCDC89Q8N998 374 aa18.44■□□□□ 0.54
COL9A3-206ENST00000466532 Q8NA96 180 aa18.44■□□□□ 0.54
COL9A3-206ENST00000466532 SPC24Q8NBT2 197 aa18.44■□□□□ 0.54
COL9A3-206ENST00000466532 PPHLN1Q8NEY8 458 aaKnown RBP18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms