RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 MPSTP25325 297 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 PBLDP30039 288 aaPredicted RBP11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 STAT5AP42229 794 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 LEPRP48357 1165 aaKnown RBP11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 PMS2P54278 862 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 THOC5Q13769 683 aaKnown RBP11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 FASTKD3Q14CZ7 662 aaKnown RBP11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 TYSND1Q2T9J0 566 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 RNF187Q5TA31 235 aaPredicted RBP11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 STEAP4Q687X5 459 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 NEPROQ6NW34 567 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 ABRAXAS1Q6UWZ7 409 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 WASH2PQ6VEQ5 465 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 UNC5AQ6ZN44 842 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 LDB1Q86U70 411 aaPredicted RBP11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 AMZ2Q86W34 360 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 CILP2Q8IUL8 1156 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 ANKMY2Q8IV38 441 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 APLFQ8IW19 511 aaPredicted RBP11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 LMNTD2Q8IXW0 634 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 ZBED8Q8IZ13 594 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 CLDN19Q8N6F1 224 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 BEND7Q8N7W2 519 aaPredicted RBP11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 OR2L2Q8NH16 312 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 CTRCQ99895 268 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 FAM129AQ9BZQ8 928 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 OSGEPL1Q9H4B0 414 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 VPS37BQ9H9H4 285 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 UCK1Q9HA47 277 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 WASH6PQ9NQA3 447 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 FBXO8Q9NRD0 319 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 C20orf96Q9NUD7 363 aaPredicted RBP11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 IL1RAPL1Q9NZN1 696 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 CPNE7Q9UBL6 633 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 SLC5A6Q9Y289 635 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 DNAJC16Q9Y2G8 782 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 SVILO95425 2214 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 MGAT4DA6NG13 374 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 LILRA5A6NI73 299 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 F8W8V4 182 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 PFDN6O15212 129 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 OR1I1O60431 355 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 NDUFS3O75489 264 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 FTH1P02794 183 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 GSTM1P09488 218 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 OR56A5P0C7T3 313 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 IDSP22304 550 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 VARSP26640 1264 aaKnown RBP11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 CSF2RBP32927 897 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 PPM1FP49593 454 aaPredicted RBP11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 GSTM4Q03013 218 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 MAP7Q14244 749 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 ZNF470Q6ECI4 717 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 ARHGAP22Q7Z5H3 698 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 SDCCAG8Q86SQ7 713 aaPredicted RBP11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 KCNMB4Q86W47 210 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 ZNF761Q86XN6 746 aaPredicted RBP11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 ESX1Q8N693 406 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 LRRN4CLQ8ND94 238 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 FBXO36Q8NEA4 188 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 HM13Q8TCT9 377 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 CALML6Q8TD86 181 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 NCSTNQ92542 709 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 CERS2Q96G23 380 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 CFAP36Q96G28 342 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 TCF12Q99081 682 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 CCM2Q9BSQ5 444 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 FAM167BQ9BTA0 163 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 PLAC1Q9HBJ0 212 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 SAYSD1Q9NPB0 183 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 ZDHHC18Q9NUE0 388 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 ENTPD4Q9Y227 616 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 PRSS21Q9Y6M0 314 aa11.59□□□□□ -0.55
SQSTM1-206ENST00000466342 DIDO1Q9BTC0 2240 aaKnown RBP11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 C17orf113A0A1B0GUU1 675 aa11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 UBA6A0AVT1 1052 aaPredicted RBP11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 PRMT5O14744 637 aaPredicted RBP11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 DLGAP3O95886 979 aa11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 RECKO95980 971 aa11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 VIPP01282 170 aa11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 RPS3P23396 243 aaKnown RBP eCLIP11.58□□□□□ -0.569e-8■■■□□ 15.4
SQSTM1-206ENST00000466342 DLSTP36957 453 aa11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 SLC19A1P41440 591 aa11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 SLC1A2P43004 574 aa11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 UBE2IP63279 158 aaKnown RBP11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 FRG1Q14331 258 aaKnown RBP11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 NFE2L1Q14494 772 aa11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 ZNF658BQ4V348 819 aaPredicted RBP11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 AGAP9Q5VTM2 703 aa11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 METRNLQ641Q3 311 aa11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 FAM83HQ6ZRV2 1179 aaPredicted RBP11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 TMEM26Q6ZUK4 368 aa11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 LRRC6Q86X45 466 aa11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 PLXDC1Q8IUK5 500 aa11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 RBM12BQ8IXT5 1001 aaKnown RBP11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 GABPB2Q8TAK5 448 aaPredicted RBP11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 GSDMBQ8TAX9 411 aa11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 PYROXD1Q8WU10 500 aa11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 LPGAT1Q92604 370 aa11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 UNKQ9C0B0 810 aaKnown RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms