RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 IL2P60568 153 aa12.18□□□□□ -0.46
HDAC4-208ENST00000463007 GRSF1Q12849 480 aaKnown RBP eCLIP12.18□□□□□ -0.46
HDAC4-208ENST00000463007 OXA1LQ15070 435 aa12.18□□□□□ -0.46
HDAC4-208ENST00000463007 CTXN3Q4LDR2 81 aa12.18□□□□□ -0.46
HDAC4-208ENST00000463007 SPATA19Q7Z5L4 167 aa12.18□□□□□ -0.46
HDAC4-208ENST00000463007 RIMKLAQ8IXN7 391 aa12.18□□□□□ -0.46
HDAC4-208ENST00000463007 ATP6V0D2Q8N8Y2 350 aa12.18□□□□□ -0.46
HDAC4-208ENST00000463007 BCL7CQ8WUZ0 217 aaPredicted RBP12.18□□□□□ -0.46
HDAC4-208ENST00000463007 PEX13Q92968 403 aa12.18□□□□□ -0.46
HDAC4-208ENST00000463007 FKBP10Q96AY3 582 aa12.18□□□□□ -0.46
HDAC4-208ENST00000463007 MAGED4Q96JG8 741 aa12.18□□□□□ -0.46
HDAC4-208ENST00000463007 DPY30Q9C005 99 aa12.18□□□□□ -0.46
HDAC4-208ENST00000463007 NDEL1Q9GZM8 345 aa12.18□□□□□ -0.46
HDAC4-208ENST00000463007 POLR1EQ9GZS1 481 aaKnown RBP12.18□□□□□ -0.46
HDAC4-208ENST00000463007 ZBTB20Q9HC78 741 aaPredicted RBP12.18□□□□□ -0.46
HDAC4-208ENST00000463007 SRRDQ9UH36 339 aa12.18□□□□□ -0.46
HDAC4-208ENST00000463007 MED16Q9Y2X0 877 aa12.18□□□□□ -0.46
HDAC4-208ENST00000463007 ANAPC1Q9H1A4 1944 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 FAM20BO75063 409 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 VPS26AO75436 327 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 MT-ND2P03891 347 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 UGT2B4P06133 528 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 ALOX12P18054 663 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 MC4RP32245 332 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 MASP1P48740 699 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 MAPKAPK2P49137 400 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 NUDT6P53370 316 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 TAF10Q12962 218 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 SETMARQ53H47 684 aaPredicted RBP12.17□□□□□ -0.46
HDAC4-208ENST00000463007 RTP2Q5QGT7 225 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 LAIR2Q6ISS4 152 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 CES5AQ6NT32 575 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 SPATC1Q76KD6 591 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 P2RY8Q86VZ1 359 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 ZFAND4Q86XD8 727 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 PTRH1Q86Y79 214 aaKnown RBP12.17□□□□□ -0.46
HDAC4-208ENST00000463007 LIX1Q8N485 282 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 GPR150Q8NGU9 434 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 FAM120BQ96EK7 910 aaKnown RBP12.17□□□□□ -0.46
HDAC4-208ENST00000463007 UGT2B28Q9BY64 529 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 ASPSCR1Q9BZE9 553 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 NACA2Q9H009 215 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 EHD1Q9H4M9 534 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 ACTL8Q9H568 366 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 TFB2MQ9H5Q4 396 aaKnown RBP12.17□□□□□ -0.46
HDAC4-208ENST00000463007 MARCH2Q9P0N8 246 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 ENPP5Q9UJA9 477 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 ELOVL7A1L3X0 281 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 S100BP04271 92 aaPredicted RBP12.17□□□□□ -0.46
HDAC4-208ENST00000463007 SLC26A3P40879 764 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 KCNQ1P51787 676 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 C16orf59Q7L2K0 433 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 TMEM173Q86WV6 379 aaPredicted RBP12.17□□□□□ -0.46
HDAC4-208ENST00000463007 CCDC103Q8IW40 242 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 ATG16L2Q8NAA4 619 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 TPD52L3Q96J77 140 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 ASB2Q96Q27 587 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 TUBA1CQ9BQE3 449 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 RERGLQ9H628 205 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 GPN2Q9H9Y4 310 aaPredicted RBP12.17□□□□□ -0.46
HDAC4-208ENST00000463007 VNN3Q9NY84 501 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 KIF17Q9P2E2 1029 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 C3orf18Q9UK00 162 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 SNX8Q9Y5X2 465 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 OBSL1O75147 1896 aa12.17□□□□□ -0.46
HDAC4-208ENST00000463007 PIKFYVEQ9Y2I7 2098 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 M0R129 80 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 UGT2B11O75310 529 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 IGFBP5P24593 272 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 DCTP40126 519 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 SLC11A1P49279 550 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 GATMP50440 423 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 NFKB2Q00653 900 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 CDK5R2Q13319 367 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 FAM171A1Q5VUB5 890 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 VTCN1Q7Z7D3 282 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 MDGA1Q8NFP4 955 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 MCFD2Q8NI22 146 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 SLC13A3Q8WWT9 602 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 HDAC2Q92769 488 aaKnown RBP12.16□□□□□ -0.46
HDAC4-208ENST00000463007 FBXO32Q969P5 355 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 ULK4Q96C45 1275 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 ZHX1-C8orf76Q96EF9 292 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 ZBTB18Q99592 522 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 OSBPL10Q9BXB5 764 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 LATS2Q9NRM7 1088 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 DNAJB9Q9UBS3 223 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 RIMKLBQ9ULI2 386 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 PCDHB14Q9Y5E9 798 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 TRIM64A6NGJ6 449 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 GGT1P19440 569 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 SLC6A4P31645 630 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 AKT1P31749 480 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 YBEYP58557 167 aaPredicted RBP12.16□□□□□ -0.46
HDAC4-208ENST00000463007 ISL1P61371 349 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 DGUOKQ16854 277 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 RBM48Q5RL73 367 aaKnown RBP12.16□□□□□ -0.46
HDAC4-208ENST00000463007 LAIR1Q6GTX8 287 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 ANKRD13BQ86YJ7 626 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 RNF175Q8N4F7 328 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms