RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 PAAF1Q9BRP4 392 aa11.46□□□□□ -0.57
CPSF3-202ENST00000460593 INPP5KQ9BT40 448 aa11.46□□□□□ -0.57
CPSF3-202ENST00000460593 COPS4Q9BT78 406 aa11.46□□□□□ -0.57
CPSF3-202ENST00000460593 SLC25A51Q9H1U9 297 aa11.46□□□□□ -0.57
CPSF3-202ENST00000460593 DCAF13Q9NV06 445 aaKnown RBP11.46□□□□□ -0.57
CPSF3-202ENST00000460593 NUFIP1Q9UHK0 495 aaKnown RBP11.46□□□□□ -0.57
CPSF3-202ENST00000460593 COMMD10Q9Y6G5 202 aa11.46□□□□□ -0.57
CPSF3-202ENST00000460593 NYNRINQ9P2P1 1898 aaKnown RBP11.46□□□□□ -0.57
CPSF3-202ENST00000460593 SSC5DA1L4H1 1573 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 HHLA1C9JL84 531 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 ADM5C9JUS6 153 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 GUCA1CO95843 209 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 PEX11BO96011 259 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 APOA1P02647 267 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 NTRK1P04629 796 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 JUNDP17535 347 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 ADCYAP1R1P41586 468 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 GDF5P43026 501 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 CTSKP43235 329 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 DGKEP52429 567 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 AIF1P55008 147 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 CD83Q01151 205 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 PLEKHG6Q3KR16 790 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 SV2CQ496J9 727 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 WDR45BQ5MNZ6 344 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 FAM171A1Q5VUB5 890 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 ZNF438Q7Z4V0 828 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 UBQLNLQ8IYU4 475 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 OR4F6Q8NGB9 312 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 HASPINQ8TF76 798 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 CCDC177Q9NQR7 707 aaPredicted RBP11.46□□□□□ -0.58
CPSF3-202ENST00000460593 CATSPERZQ9NTU4 200 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 TAS2R9Q9NYW1 312 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 COQ3Q9NZJ6 369 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 KIF17Q9P2E2 1029 aa11.46□□□□□ -0.58
CPSF3-202ENST00000460593 SAGE2PA6NJ88 616 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 UPK3BL1B0FP48 263 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 UPK3BL2E5RIL1 263 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 H3BRB1 525 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 E2F3O00716 465 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 RGS5O15539 181 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 CPNE3O75131 537 aaKnown RBP11.45□□□□□ -0.58
CPSF3-202ENST00000460593 ATXN1LP0C7T5 689 aaKnown RBP11.45□□□□□ -0.58
CPSF3-202ENST00000460593 EFNA1P20827 205 aaPredicted RBP11.45□□□□□ -0.58
CPSF3-202ENST00000460593 WARSP23381 471 aaKnown RBP11.45□□□□□ -0.58
CPSF3-202ENST00000460593 HUNKP57058 714 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 RPP38P78345 283 aaKnown RBP11.45□□□□□ -0.58
CPSF3-202ENST00000460593 DOC2BQ14184 412 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 PTPRNQ16849 979 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 ZNF551Q7Z340 670 aaPredicted RBP11.45□□□□□ -0.58
CPSF3-202ENST00000460593 TRIM48Q8IWZ4 208 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 CYP4Z2PQ8N1L4 340 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 KIAA1958Q8N8K9 716 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 OR56A4Q8NGH8 313 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 HCAR2Q8TDS4 363 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 KLRG1Q96E93 195 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 PDLIM5Q96HC4 596 aaKnown RBP11.45□□□□□ -0.58
CPSF3-202ENST00000460593 SENP8Q96LD8 212 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 TRNT1Q96Q11 434 aaKnown RBP11.45□□□□□ -0.58
CPSF3-202ENST00000460593 TTPALQ9BTX7 342 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 FAM124BQ9H5Z6 455 aaPredicted RBP11.45□□□□□ -0.58
CPSF3-202ENST00000460593 GPR83Q9NYM4 423 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 SLC6A14Q9UN76 642 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 E9PAM4 449 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 LOC110117498-PIK3R3F6TDL0 507 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 F9P00740 461 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 STSP08842 583 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 CDKN2CP42773 168 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 P2RX3P56373 397 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 SNRPD2P62316 118 aaKnown RBP11.45□□□□□ -0.58
CPSF3-202ENST00000460593 TTLL4Q14679 1199 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 ALFQ53S48 1182 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 TRAF7Q6Q0C0 670 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 ENTHD1Q8IYW4 607 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 LIX1Q8N485 282 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 SETD9Q8NE22 299 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 OR4L1Q8NH43 312 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 RHEBL1Q8TAI7 183 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 CHAC2Q8WUX2 184 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 FAM120BQ96EK7 910 aaKnown RBP11.45□□□□□ -0.58
CPSF3-202ENST00000460593 LINGO1Q96FE5 620 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 EGLN2Q96KS0 407 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 MUTYHQ9UIF7 546 aa11.45□□□□□ -0.58
CPSF3-202ENST00000460593 CENPBD1B2RD01 187 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 AREL1O15033 823 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 MUSKO15146 869 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 LRATO95237 230 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 MED26O95402 600 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 CSF2P04141 144 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 FHP07954 510 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 ITGAMP11215 1152 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 DPEP1P16444 411 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 CBLP22681 906 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 CA5AP35218 305 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 HTR2BP41595 481 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 VLDLRP98155 873 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 CHRNEQ04844 493 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 RAD51Q06609 339 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 KCTD2Q14681 263 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 KIAA0040Q15053 153 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms