RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 C2P06681 752 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 CCDC166P0CW27 439 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 CRHR1P34998 444 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 EPHA4P54764 986 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 CLDN6P56747 220 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 IRF9Q00978 393 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 DLG1Q12959 904 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 ILKQ13418 452 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 PUM1Q14671 1186 aaKnown RBP eCLIP12.66□□□□□ -0.38
VPS33A-202ENST00000451053 PLCL1Q15111 1095 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 TSNAXIP1Q2TAA8 658 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 AMZ1Q400G9 498 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 PPM1JQ5JR12 505 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 BANPQ8N9N5 519 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 ZFPM2Q8WW38 1151 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 RSC1A1Q92681 617 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 DLG3Q92796 817 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 PDLIM5Q96HC4 596 aaKnown RBP12.66□□□□□ -0.38
VPS33A-202ENST00000451053 SELENOSQ9BQE4 189 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 LRRN3Q9H3W5 708 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 XKR8Q9H6D3 395 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 KCNK9Q9NPC2 374 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 NKIRAS1Q9NYS0 192 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 POLG2Q9UHN1 485 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 GRID1Q9ULK0 1009 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 ICKQ9UPZ9 632 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 APOBEC2Q9Y235 224 aaKnown RBP12.66□□□□□ -0.38
VPS33A-202ENST00000451053 PCDHGA1Q9Y5H4 931 aa12.66□□□□□ -0.38
VPS33A-202ENST00000451053 GOLGA4Q13439 2230 aaKnown RBP12.65□□□□□ -0.38
VPS33A-202ENST00000451053 TMEM120BA0PK00 339 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 FOXO6A8MYZ6 492 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 CDC7O00311 574 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 BTN3A1O00481 513 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 NTN3O00634 580 aaPredicted RBP12.65□□□□□ -0.38
VPS33A-202ENST00000451053 UBXN7O94888 489 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 CATP04040 527 aaKnown RBP12.65□□□□□ -0.38
VPS33A-202ENST00000451053 PROS1P07225 676 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 TYRP1P17643 537 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 CD1CP29017 333 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 CSF2RBP32927 897 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 CFHR1Q03591 330 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 CSHL1Q14406 222 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 PHKG1Q16816 387 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 KLC3Q6P597 504 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 DHRS13Q6UX07 377 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 SH2D5Q6ZV89 423 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 USP53Q70EK8 1073 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 UBE2R2Q712K3 238 aaPredicted RBP12.65□□□□□ -0.38
VPS33A-202ENST00000451053 CENPLQ8N0S6 344 aaPredicted RBP12.65□□□□□ -0.38
VPS33A-202ENST00000451053 LMNTD1Q8N9Z9 388 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 OR4E2Q8NGC2 313 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 OR10G6Q8NH81 332 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 KCTD4Q8WVF5 259 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 LCN9Q8WX39 176 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 UBXN10Q96LJ8 280 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 IL17FQ96PD4 163 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 MENTQ9BUN1 341 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 DERL2Q9GZP9 239 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 ABCG4Q9H172 646 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 TFB2MQ9H5Q4 396 aaKnown RBP12.65□□□□□ -0.38
VPS33A-202ENST00000451053 IGSF5Q9NSI5 407 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 ATXN7L1Q9ULK2 861 aaPredicted RBP12.65□□□□□ -0.38
VPS33A-202ENST00000451053 PCNX2A6NKB5 2137 aa12.65□□□□□ -0.38
VPS33A-202ENST00000451053 RP1P56715 2156 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 COL27A1Q8IZC6 1860 aaPredicted RBP12.64□□□□□ -0.39
VPS33A-202ENST00000451053 ASXL3Q9C0F0 2248 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 CCDC189A1A4V9 331 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 OR6C74A6NCV1 312 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 MYO1CO00159 1063 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 ZBTB14O43829 449 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 TYROBPO43914 113 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 SPAG7O75391 227 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 TOP3BO95985 862 aaKnown RBP12.64□□□□□ -0.39
VPS33A-202ENST00000451053 C8GP07360 202 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 LTA4HP09960 611 aaKnown RBP12.64□□□□□ -0.39
VPS33A-202ENST00000451053 CD1DP15813 335 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 AMD1P17707 334 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 PKLRP30613 574 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 ID4P47928 161 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 PPM1FP49593 454 aaPredicted RBP12.64□□□□□ -0.39
VPS33A-202ENST00000451053 GPLD1P80108 840 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 E2F1Q01094 437 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 INSM1Q01101 510 aaPredicted RBP12.64□□□□□ -0.39
VPS33A-202ENST00000451053 SP140Q13342 867 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 FAM83EQ2M2I3 478 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 TTC23LQ6PF05 361 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 SBSNQ6UWP8 590 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 TMPRSS9Q7Z410 1059 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 CLEC14AQ86T13 490 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 AMIGO1Q86WK6 493 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 FBXO15Q8NCQ5 510 aaPredicted RBP12.64□□□□□ -0.39
VPS33A-202ENST00000451053 DENND1AQ8TEH3 1009 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 RAD51AP1Q96B01 352 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 NXNL1Q96CM4 212 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 AHCYL2Q96HN2 611 aaKnown RBP12.64□□□□□ -0.39
VPS33A-202ENST00000451053 GFM1Q96RP9 751 aaKnown RBP12.64□□□□□ -0.39
VPS33A-202ENST00000451053 PKP4Q99569 1192 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 NUDT22Q9BRQ3 303 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 SLC12A9Q9BXP2 914 aa12.64□□□□□ -0.39
VPS33A-202ENST00000451053 SRMSQ9H3Y6 488 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms