RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 ZCCHC12Q6PEW1 402 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 POMZP3Q6PJE2 187 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 SMARCD3Q6STE5 483 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 ERMP1Q7Z2K6 904 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 GALNTL5Q7Z4T8 443 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 PDSS2Q86YH6 399 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 GPR135Q8IZ08 494 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 OR2T29Q8NH02 315 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 DNAJA4Q8WW22 397 aaPredicted RBP7.63□□□□□ -1.19
NEDD9-204ENST00000448183 NTAN1Q96AB6 310 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 ITPAQ9BY32 194 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 PREBQ9HCU5 417 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 XPNPEP1Q9NQW7 623 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 UBR1Q8IWV7 1749 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 TBC1D3DA0A087WVF3 549 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 TBC1D3IA0A087WXS9 549 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 TBC1D3EA0A087X179 549 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 TBC1D3KA0A087X1G2 549 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 TBC1D3FA6NER0 549 aaPredicted RBP7.63□□□□□ -1.19
NEDD9-204ENST00000448183 YJEFN3A6XGL0 299 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 TBC1D3LB9A6J9 549 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 PLOD2O00469 737 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 PDPK1O15530 556 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 FFAR2O15552 330 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 PI15O43692 258 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 OR1F1O43749 312 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 TPST2O60704 377 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 PRNPP04156 253 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 MMP3P08254 477 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 TBC1D3HP0C7X1 549 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 IL7RP16871 459 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 CMPK1P30085 196 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 CRISP3P54108 245 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 ATXN1P54253 815 aaKnown RBP7.63□□□□□ -1.19
NEDD9-204ENST00000448183 CCL23P55773 120 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 CSTF1Q05048 431 aaKnown RBP7.63□□□□□ -1.19
NEDD9-204ENST00000448183 RBM20Q5T481 1227 aaKnown RBP7.63□□□□□ -1.19
NEDD9-204ENST00000448183 SH3PXD2AQ5TCZ1 1133 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 TBC1D3GQ6DHY5 549 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 TBC1D3CQ6IPX1 549 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 ANKRD23Q86SG2 305 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 TBC1D3Q8IZP1 549 aaPredicted RBP7.63□□□□□ -1.19
NEDD9-204ENST00000448183 SPAG16Q8N0X2 631 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 UPF1Q92900 1129 aaKnown RBP eCLIP7.63□□□□□ -1.19
NEDD9-204ENST00000448183 C12orf43Q96C57 262 aaKnown RBP7.63□□□□□ -1.19
NEDD9-204ENST00000448183 HSPBAP1Q96EW2 488 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 SNX27Q96L92 541 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 IFT27Q9BW83 186 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 OXCT2Q9BYC2 517 aaPredicted RBP7.63□□□□□ -1.19
NEDD9-204ENST00000448183 DEC1Q9P2X7 70 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 RIPK3Q9Y572 518 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 FKBP7Q9Y680 259 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 ZFP37Q9Y6Q3 630 aaPredicted RBP7.63□□□□□ -1.19
NEDD9-204ENST00000448183 A0A075B6Q4 140 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 MYBPHLA2RUH7 354 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 CLIC1O00299 241 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 CLDN4O14493 209 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 BCAS2O75934 225 aaPredicted RBP7.63□□□□□ -1.19
NEDD9-204ENST00000448183 INMTO95050 263 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 MATN4O95460 622 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 PRLP01236 227 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 SLC35G6P0C7Q6 338 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 GNALP38405 381 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 GRIA1P42261 906 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 KHKP50053 298 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 TUBA3CQ13748 450 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 NPY5RQ15761 445 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 NDUFA9Q16795 377 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 SLC10A6Q3KNW5 377 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 TNFAIP8L2Q6P589 184 aaPredicted RBP7.63□□□□□ -1.19
NEDD9-204ENST00000448183 PAQR3Q6TCH7 311 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 PAMR1Q6UXH9 720 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 KLHL36Q8N4N3 616 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 ZNF615Q8N8J6 731 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 CEP76Q8TAP6 659 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 EXO5Q9H790 373 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 IFT46Q9NQC8 304 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 SLC17A6Q9P2U8 582 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 GTF2IRD1Q9UHL9 959 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 FBXW2Q9UKT8 454 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 POFUT2Q9Y2G5 429 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 A0A1W2PRB8 838 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 AKAP8O43823 692 aaKnown RBP7.63□□□□□ -1.19
NEDD9-204ENST00000448183 DLX3O60479 287 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 CLPXO76031 633 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 SIX3O95343 332 aaPredicted RBP7.63□□□□□ -1.19
NEDD9-204ENST00000448183 GLUD1P00367 558 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 VARSP26640 1264 aaKnown RBP7.63□□□□□ -1.19
NEDD9-204ENST00000448183 CTNNB1P35222 781 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 ASPAP45381 313 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 XKP51811 444 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 CBFBQ13951 182 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 ZNF517Q6ZMY9 492 aaPredicted RBP7.63□□□□□ -1.19
NEDD9-204ENST00000448183 SLC24A5Q71RS6 500 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 MTERF1Q99551 399 aaKnown RBP7.63□□□□□ -1.19
NEDD9-204ENST00000448183 SLC39A3Q9BRY0 314 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 PCBD2Q9H0N5 130 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 PLEKHA1Q9HB21 404 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 FLRT1Q9NZU1 646 aa7.63□□□□□ -1.19
NEDD9-204ENST00000448183 MKLN1Q9UL63 735 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms