RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 PAPPAQ13219 1627 aa4.05□□□□□ -1.76
VPS29-202ENST00000447578 TRIP12Q14669 1992 aaPredicted RBP4.05□□□□□ -1.76
VPS29-202ENST00000447578 AFDNP55196 1824 aaKnown RBP4.05□□□□□ -1.76
VPS29-202ENST00000447578 RIC1Q4ADV7 1423 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 TJP1Q07157 1748 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 AK9Q5TCS8 1911 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 KLF18A0A0U1RQI7 1052 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 RPS10-NUDT3A0A1W2PQS6 291 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 ANXA2P2A6NMY6 339 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 MAP2K7O14733 419 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 GPAA1O43292 621 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 PRAMEF11O60813 436 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 IDH1O75874 414 aaKnown RBP4.04□□□□□ -1.76
VPS29-202ENST00000447578 KCNK5O95279 499 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 LINGO3P0C6S8 592 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 G6PDP11413 515 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 STMN1P16949 149 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 PIGAP37287 484 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 EIF2S3P41091 472 aaKnown RBP4.04□□□□□ -1.76
VPS29-202ENST00000447578 ENTPD1P49961 510 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 AP1B1Q10567 949 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 TUBB2AQ13885 445 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 PTPRCAPQ14761 206 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 SMU1Q2TAY7 513 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 ZSCAN25Q6NSZ9 544 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 TEX38Q6PEX7 206 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 SASS6Q6UVJ0 657 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 PPP1R21Q6ZMI0 780 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 SPATA21Q7Z572 469 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 SPATA19Q7Z5L4 167 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 RBM23Q86U06 439 aaKnown RBP4.04□□□□□ -1.76
VPS29-202ENST00000447578 GPSM1Q86YR5 675 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 TUSC5Q8IXB3 177 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 C10orf53Q8N6V4 93 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 NAT8LQ8N9F0 302 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 SPC24Q8NBT2 197 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 OR8H1Q8NGG4 311 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 OR1J2Q8NGS2 313 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 NCOA7Q8NI08 942 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 CTCFLQ8NI51 663 aaPredicted RBP4.04□□□□□ -1.76
VPS29-202ENST00000447578 TAS1R2Q8TE23 839 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 WFIKKN2Q8TEU8 576 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 LPAR1Q92633 364 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 PTP4A1Q93096 173 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 MR1Q95460 341 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 CCDC47Q96A33 483 aaKnown RBP4.04□□□□□ -1.76
VPS29-202ENST00000447578 ZNF274Q96GC6 653 aaPredicted RBP4.04□□□□□ -1.76
VPS29-202ENST00000447578 ZNF396Q96N95 335 aaPredicted RBP4.04□□□□□ -1.76
VPS29-202ENST00000447578 SMC6Q96SB8 1091 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 WDR77Q9BQA1 342 aaPredicted RBP4.04□□□□□ -1.76
VPS29-202ENST00000447578 TUBB2BQ9BVA1 445 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 CLSTN2Q9H4D0 955 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 ESRP2Q9H6T0 727 aaKnown RBP4.04□□□□□ -1.76
VPS29-202ENST00000447578 MAGIXQ9H6Y5 334 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 ANKZF1Q9H8Y5 726 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 ADPRHL2Q9NX46 363 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 SLC9A2Q9UBY0 812 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 STK39Q9UEW8 545 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 SLC24A2Q9UI40 661 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 NUP188Q5SRE5 1749 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 DISP2A7MBM2 1401 aa4.04□□□□□ -1.76
VPS29-202ENST00000447578 ABCC12Q96J65 1359 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 UBN2Q6ZU65 1347 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 ZNF532Q9HCE3 1301 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 A0A087WYN8 130 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 GTPBP10A4D1E9 387 aaKnown RBP4.03□□□□□ -1.76
VPS29-202ENST00000447578 A4D1N5 150 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 TMEM8BA6NDV4 472 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 EIF4E1BA6NMX2 242 aaKnown RBP4.03□□□□□ -1.76
VPS29-202ENST00000447578 ERVV-1B6SEH8 477 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 CPLX1O14810 134 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 ZNF263O14978 683 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 AP5Z1O43299 807 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 PLPP2O43688 288 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 EGFP01133 1207 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 MT-ND3P03897 115 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 UQCRFS1P1P0C7P4 283 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 SRCP12931 536 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 DDX5P17844 614 aaKnown RBP4.03□□□□□ -1.76
VPS29-202ENST00000447578 MAOAP21397 527 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 NR2F2P24468 414 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 NMBRP28336 390 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 ALDH3A2P51648 485 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 ZNF75DP51815 510 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 RAD23BP54727 409 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 SPOCK1Q08629 439 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 COASYQ13057 564 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 TRDNQ13061 729 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 EIF2S3LQ2VIR3 472 aaKnown RBP4.03□□□□□ -1.76
VPS29-202ENST00000447578 ATP13A5Q4VNC0 1218 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 ZRANB3Q5FWF4 1079 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 DNTTIP2Q5QJE6 756 aaKnown RBP4.03□□□□□ -1.76
VPS29-202ENST00000447578 SFMBT2Q5VUG0 894 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 SUSD4Q5VX71 490 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 NSUN5P2Q63ZY6 315 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 PLA2G4FQ68DD2 849 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 CCDC73Q6ZRK6 1079 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 SLC16A12Q6ZSM3 486 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 PATL1Q86TB9 770 aaKnown RBP4.03□□□□□ -1.76
VPS29-202ENST00000447578 CUZD1Q86UP6 607 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms