RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 CNDP2Q96KP4 475 aaKnown RBP11.53□□□□□ -0.56
CD44-209ENST00000433892 RDH12Q96NR8 316 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 RBM4BQ9BQ04 359 aaKnown RBP11.53□□□□□ -0.56
CD44-209ENST00000433892 INPP5KQ9BT40 448 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 HTATIP2Q9BUP3 242 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 C2orf49Q9BVC5 232 aaPredicted RBP11.53□□□□□ -0.56
CD44-209ENST00000433892 RBM4Q9BWF3 364 aaKnown RBP11.53□□□□□ -0.56
CD44-209ENST00000433892 EXD2Q9NVH0 621 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 CLEC4EQ9ULY5 219 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 PDE10AQ9Y233 779 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 TRBV5-3A0A0A0MS03 114 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 NPIPB15A6NHN6 443 aaPredicted RBP11.53□□□□□ -0.56
CD44-209ENST00000433892 GREM1O60565 184 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 ABLIM3O94929 683 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 HTR1AP08908 422 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 MYCLP1P12525 358 aaPredicted RBP11.53□□□□□ -0.56
CD44-209ENST00000433892 AGXTP21549 392 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 SPAM1P38567 509 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 RPIAP49247 311 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 CD47Q08722 323 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 VAC14Q08AM6 782 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 BFSP2Q13515 415 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 SKIV2LQ15477 1246 aaKnown RBP11.53□□□□□ -0.56
CD44-209ENST00000433892 ZNF829Q3KNS6 432 aaPredicted RBP11.53□□□□□ -0.56
CD44-209ENST00000433892 TTLL9Q3SXZ7 439 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 GPR149Q86SP6 731 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 EID3Q8N140 333 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 SVOPLQ8N434 492 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 PJA1Q8NG27 643 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 UBTD2Q8WUN7 234 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 HDAC2Q92769 488 aaKnown RBP11.53□□□□□ -0.56
CD44-209ENST00000433892 FAM120BQ96EK7 910 aaKnown RBP11.53□□□□□ -0.56
CD44-209ENST00000433892 NRBF2Q96F24 287 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 SCLYQ96I15 445 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 TSSK3Q96PN8 268 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 CSF3RQ99062 836 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 TSEN34Q9BSV6 310 aaKnown RBP11.53□□□□□ -0.56
CD44-209ENST00000433892 RDH14Q9HBH5 336 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 SERHLQ9NQF3 203 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 DNAAF2Q9NVR5 837 aaKnown RBP11.53□□□□□ -0.56
CD44-209ENST00000433892 LMCD1Q9NZU5 365 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 CASP8AP2Q9UKL3 1982 aa11.53□□□□□ -0.56
CD44-209ENST00000433892 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.52□□□□□ -0.56
CD44-209ENST00000433892 LOC100130705A0A1B0GUX0 176 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 PTGES3LE9PB15 166 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 PRRG1O14668 218 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 BNIP3LO60238 219 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 LRATO95237 230 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 KRT6AP02538 564 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 KRT6BP04259 564 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 RETP07949 1114 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 ANXA5P08758 320 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 PFKLP17858 780 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 TACR1P25103 407 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 GSTM2P28161 218 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 DCTP40126 519 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 CDKN2CP42773 168 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 NRIP1P48552 1158 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 KRT6CP48668 564 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 PLA2G16P53816 162 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 RPS14P62263 151 aaKnown RBP11.52□□□□□ -0.56
CD44-209ENST00000433892 SPIDRQ14159 915 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 VEPH1Q14D04 833 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 ZXDCQ2QGD7 858 aaPredicted RBP11.52□□□□□ -0.56
CD44-209ENST00000433892 PGS1Q32NB8 556 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 LYPLAL1Q5VWZ2 237 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 TPGS1Q6ZTW0 290 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 ADHFE1Q8IWW8 467 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 GIPC3Q8TF64 312 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 SKA2Q8WVK7 121 aaPredicted RBP11.52□□□□□ -0.56
CD44-209ENST00000433892 SELENOMQ8WWX9 145 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 PYCR2Q96C36 320 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 TRMT2BQ96GJ1 504 aaKnown RBP11.52□□□□□ -0.56
CD44-209ENST00000433892 DGCR6LQ9BY27 220 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 ATP13A3Q9H7F0 1226 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 TBC1D23Q9NUY8 699 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 ASIC5Q9NY37 505 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 USE1Q9NZ43 259 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 CPQQ9Y646 472 aa11.52□□□□□ -0.56
CD44-209ENST00000433892 KRT87PA6NCN2 255 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 C16orf96A6NNT2 1141 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 ERN1O75460 977 aaKnown RBP11.52□□□□□ -0.57
CD44-209ENST00000433892 ZNF821O75541 412 aaPredicted RBP11.52□□□□□ -0.57
CD44-209ENST00000433892 EFEMP2O95967 443 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 INHBBP09529 407 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 NR4A1P22736 598 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 CCR7P32248 378 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 S100A3P33764 101 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 C21orf59P57076 290 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 GPR33Q49SQ1 333 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 DGKKQ5KSL6 1271 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 ATG9BQ674R7 924 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 GTF2IRD2BQ6EKJ0 949 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 GRAMD4Q6IC98 578 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 LAIR2Q6ISS4 152 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 Q6ZNX1 250 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 RNF165Q6ZSG1 346 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 RFLNAQ6ZTI6 216 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 GTF2IRD2Q86UP8 949 aa11.52□□□□□ -0.57
CD44-209ENST00000433892 CALHM3Q86XJ0 350 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms