RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 CCL4P13236 92 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 CD9P21926 228 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 PEBP1P30086 187 aaKnown RBP12.09□□□□□ -0.47
SKA1-203ENST00000417656 CSTF2P33240 577 aaKnown RBP eCLIP12.09□□□□□ -0.47
SKA1-203ENST00000417656 CCNFP41002 786 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 SKIV2L2P42285 1042 aaKnown RBP12.09□□□□□ -0.47
SKA1-203ENST00000417656 RGS4P49798 205 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 SEPHS1P49903 392 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 RAB28P51157 221 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 TAS2R39P59534 338 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 NAB1Q13506 487 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 FAM153CQ494X1 144 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 TTC23LQ6PF05 361 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 FBXO38Q6PIJ6 1188 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 FAM129CQ86XR2 697 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 LINC01555Q8NAE3 123 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 UHMK1Q8TAS1 419 aaKnown RBP12.09□□□□□ -0.47
SKA1-203ENST00000417656 DENND1AQ8TEH3 1009 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 EEF1AKMT1Q8WVE0 214 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 ZCCHC14Q8WYQ9 949 aaKnown RBP12.09□□□□□ -0.47
SKA1-203ENST00000417656 PMEPA1Q969W9 287 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 RAD51AP1Q96B01 352 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 MRRFQ96E11 262 aaKnown RBP12.09□□□□□ -0.47
SKA1-203ENST00000417656 CD180Q99467 661 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 GPR22Q99680 433 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 MAP3K3Q99759 626 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 ZNF768Q9H5H4 540 aaKnown RBP12.09□□□□□ -0.47
SKA1-203ENST00000417656 CCDC86Q9H6F5 360 aaKnown RBP12.09□□□□□ -0.47
SKA1-203ENST00000417656 ACSS3Q9H6R3 686 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 ANKZF1Q9H8Y5 726 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 CAB39LQ9H9S4 337 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 ASCL3Q9NQ33 180 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 OCIAD1Q9NX40 245 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 SPHK1Q9NYA1 384 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 ACTR10Q9NZ32 417 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 MTO1Q9Y2Z2 717 aaKnown RBP12.09□□□□□ -0.47
SKA1-203ENST00000417656 PCDHGA8Q9Y5G5 932 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 CHD8Q9HCK8 2581 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 KNTC1P50748 2209 aa12.09□□□□□ -0.47
SKA1-203ENST00000417656 IGF2RP11717 2491 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 IGHV5-51A0A0C4DH38 117 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 PIPSLA2A3N6 862 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 EFCAB7A8K855 629 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 C2orf74A8MZ97 194 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 TSPAN12O95859 305 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 FGF3P11487 239 aaPredicted RBP12.08□□□□□ -0.48
SKA1-203ENST00000417656 UGT2B7P16662 529 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 ZNF37AP17032 561 aaPredicted RBP12.08□□□□□ -0.48
SKA1-203ENST00000417656 CDH3P22223 829 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 MAPK10P53779 464 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 SLMAPQ14BN4 828 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 UAP1Q16222 522 aaPredicted RBP12.08□□□□□ -0.48
SKA1-203ENST00000417656 LRRC8EQ6NSJ5 796 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 TMEM207Q6UWW9 146 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 CYHR1Q6ZMK1 362 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 UBE2R2Q712K3 238 aaPredicted RBP12.08□□□□□ -0.48
SKA1-203ENST00000417656 TRIM73Q86UV7 250 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 RASGRP3Q8IV61 690 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 CEP97Q8IW35 865 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 MYO1HQ8N1T3 1032 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 C2orf73Q8N5S3 287 aaPredicted RBP12.08□□□□□ -0.48
SKA1-203ENST00000417656 OR2L8Q8NGY9 312 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 CNTNAP3BQ96NU0 1288 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 CYTH2Q99418 400 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 RAB11FIP5Q9BXF6 653 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 FUT8Q9BYC5 575 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 CNTNAP3Q9BZ76 1288 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 SIDT1Q9NXL6 827 aaKnown RBP12.08□□□□□ -0.48
SKA1-203ENST00000417656 OR6C2Q9NZP2 312 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 SPATA7Q9P0W8 599 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.08□□□□□ -0.48
SKA1-203ENST00000417656 ADAMTS6Q9UKP5 1117 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 SLC39A10Q9ULF5 831 aa12.08□□□□□ -0.48
SKA1-203ENST00000417656 V9GYY5 206 aaPredicted RBP12.08□□□□□ -0.48
SKA1-203ENST00000417656 SNRNP200O75643 2136 aaKnown RBP12.07□□□□□ -0.48
SKA1-203ENST00000417656 MYO1CO00159 1063 aa12.07□□□□□ -0.48
SKA1-203ENST00000417656 TOX3O15405 576 aaPredicted RBP12.07□□□□□ -0.48
SKA1-203ENST00000417656 PHGDHO43175 533 aaKnown RBP12.07□□□□□ -0.48
SKA1-203ENST00000417656 DXOO77932 396 aaKnown RBP12.07□□□□□ -0.48
SKA1-203ENST00000417656 SYF2O95926 243 aaKnown RBP12.07□□□□□ -0.48
SKA1-203ENST00000417656 ITGA2BP08514 1039 aa12.07□□□□□ -0.48
SKA1-203ENST00000417656 PVRP15151 417 aa12.07□□□□□ -0.48
SKA1-203ENST00000417656 TNFRSF8P28908 595 aa12.07□□□□□ -0.48
SKA1-203ENST00000417656 RBMS1P29558 406 aaKnown RBP12.07□□□□□ -0.48
SKA1-203ENST00000417656 PRDX3P30048 256 aaKnown RBP12.07□□□□□ -0.48
SKA1-203ENST00000417656 SPRP35270 261 aaPredicted RBP12.07□□□□□ -0.48
SKA1-203ENST00000417656 PMS2P54278 862 aa12.07□□□□□ -0.48
SKA1-203ENST00000417656 SLC12A2P55011 1212 aa12.07□□□□□ -0.48
SKA1-203ENST00000417656 IL2P60568 153 aa12.07□□□□□ -0.48
SKA1-203ENST00000417656 SH3BP2P78314 561 aa12.07□□□□□ -0.48
SKA1-203ENST00000417656 POU4F1Q01851 419 aa12.07□□□□□ -0.48
SKA1-203ENST00000417656 ILF2Q12905 390 aaKnown RBP12.07□□□□□ -0.48
SKA1-203ENST00000417656 SP140Q13342 867 aa12.07□□□□□ -0.48
SKA1-203ENST00000417656 BMPR2Q13873 1038 aa12.07□□□□□ -0.48
SKA1-203ENST00000417656 USP10Q14694 798 aaKnown RBP12.07□□□□□ -0.48
SKA1-203ENST00000417656 GRTP1Q5TC63 336 aa12.07□□□□□ -0.48
SKA1-203ENST00000417656 SPESP1Q6UW49 350 aa12.07□□□□□ -0.48
SKA1-203ENST00000417656 RAB42Q8N4Z0 105 aa12.07□□□□□ -0.48
SKA1-203ENST00000417656 BMPERQ8N8U9 685 aa12.07□□□□□ -0.48
SKA1-203ENST00000417656 OR9A1PQ8NGU1 263 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms