RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 PLEKHN1Q494U1 663 aaPredicted RBP11.15□□□□□ -0.62
USP4-204ENST00000416417 TSTD2Q5T7W7 516 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 FHL5Q5TD97 284 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 PACS1Q6VY07 963 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 MED25Q71SY5 747 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 ZNF534Q76KX8 674 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 MRGPREQ86SM8 312 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 TBC1D21Q8IYX1 336 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 DNAJC22Q8N4W6 341 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 DTWD1Q8N5C7 304 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 OR6P1Q8NGX9 317 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 OR5K2Q8NHB8 316 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 TCTN2Q96GX1 697 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 SGSM3Q96HU1 749 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 CALR3Q96L12 384 aaKnown RBP11.15□□□□□ -0.62
USP4-204ENST00000416417 GBP5Q96PP8 586 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 C19orf43Q9BQ61 176 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 SLAMF7Q9NQ25 335 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 CASS4Q9NQ75 786 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 GPR83Q9NYM4 423 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 IFT80Q9P2H3 777 aaPredicted RBP11.15□□□□□ -0.62
USP4-204ENST00000416417 GPN3Q9UHW5 284 aaPredicted RBP11.15□□□□□ -0.62
USP4-204ENST00000416417 TSR3Q9UJK0 312 aaKnown RBP11.15□□□□□ -0.62
USP4-204ENST00000416417 ZSCAN9O15535 394 aaPredicted RBP11.14□□□□□ -0.63
USP4-204ENST00000416417 PSMD3O43242 534 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 LIASO43766 372 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 DPM1O60762 260 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 OR56A5P0C7T3 313 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 MAGP20916 626 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 MCM3P25205 808 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 PSMA3P25788 255 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 GRIA3P42263 894 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 CRADDP78560 199 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 CDH17Q12864 832 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 C4orf17Q53FE4 359 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 RHBDD2Q6NTF9 364 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 GAS2L3Q86XJ1 694 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 RAB43Q86YS6 212 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 TMEM102Q8N9M5 508 aaPredicted RBP11.14□□□□□ -0.63
USP4-204ENST00000416417 LINC01555Q8NAE3 123 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 SPC24Q8NBT2 197 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.14□□□□□ -0.63
USP4-204ENST00000416417 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.14□□□□□ -0.63
USP4-204ENST00000416417 ZBTB20Q9HC78 741 aaPredicted RBP11.14□□□□□ -0.63
USP4-204ENST00000416417 SLC22A11Q9NSA0 550 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 MARCH4Q9P2E8 410 aaPredicted RBP11.14□□□□□ -0.63
USP4-204ENST00000416417 NDOR1Q9UHB4 597 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 POLG2Q9UHN1 485 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 RUVBL2Q9Y230 463 aaKnown RBP11.14□□□□□ -0.63
USP4-204ENST00000416417 USP9XQ93008 2570 aaPredicted RBP11.14□□□□□ -0.63
USP4-204ENST00000416417 MIF4GDA9UHW6 222 aaKnown RBP11.14□□□□□ -0.63
USP4-204ENST00000416417 UMODP07911 640 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 HBQ1P09105 142 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 GSTM1P09488 218 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 ITGAXP20702 1163 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 ALAS2P22557 587 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 PKLRP30613 574 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 FOLR3P41439 243 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 RRADP55042 308 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 DCDP81605 110 aaKnown RBP11.14□□□□□ -0.63
USP4-204ENST00000416417 GSTM4Q03013 218 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 KIF5AQ12840 1032 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 OASLQ15646 514 aaKnown RBP11.14□□□□□ -0.63
USP4-204ENST00000416417 NKAIN1Q4KMZ8 207 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 AFTPHQ6ULP2 937 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 SHISA6Q6ZSJ9 500 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 PPP1R32Q7Z5V6 425 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 LINC00523Q86TU6 105 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 SPNS2Q8IVW8 549 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 CISD2Q8N5K1 135 aaKnown RBP11.14□□□□□ -0.63
USP4-204ENST00000416417 METTL27Q8N6F8 245 aaPredicted RBP11.14□□□□□ -0.63
USP4-204ENST00000416417 OR4L1Q8NH43 312 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 PRR7Q8TB68 274 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 HES6Q96HZ4 224 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 SMAD5Q99717 465 aaKnown RBP11.14□□□□□ -0.63
USP4-204ENST00000416417 RAB6BQ9NRW1 208 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 TXLNGQ9NUQ3 528 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 OR6C2Q9NZP2 312 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 PLEKHB1Q9UF11 243 aaPredicted RBP11.14□□□□□ -0.63
USP4-204ENST00000416417 ZNF148Q9UQR1 794 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 PADI2Q9Y2J8 665 aa11.14□□□□□ -0.63
USP4-204ENST00000416417 HEATR9A2RTY3 570 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 E7EVH7 732 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 NRP2O60462 931 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 PSMB5P28074 263 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 TERF1P54274 439 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 SESN2P58004 480 aaPredicted RBP11.13□□□□□ -0.63
USP4-204ENST00000416417 GRB7Q14451 532 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 SSPNQ14714 243 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 NR6A1Q15406 480 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 SLC5A12Q1EHB4 618 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 CCSMST1Q4G0I0 132 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 FASTKD1Q53R41 847 aaKnown RBP11.13□□□□□ -0.63
USP4-204ENST00000416417 DCAF10Q5QP82 559 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 TTLL10Q6ZVT0 673 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 MCATQ8IVS2 390 aaKnown RBP11.13□□□□□ -0.63
USP4-204ENST00000416417 SLC22A15Q8IZD6 547 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 SYCE1Q8N0S2 351 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 INPP5DQ92835 1189 aa11.13□□□□□ -0.63
USP4-204ENST00000416417 SNRNP40Q96DI7 357 aaKnown RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms