RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 DCSTAMPQ9H295 470 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 DNAJC18Q9H819 358 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 GPRC5CQ9NQ84 441 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 ZNF70Q9UC06 446 aaPredicted RBP13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 NPIPA1Q9UND3 350 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 ZNF705GA8MUZ8 300 aaPredicted RBP13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 LGR5O75473 907 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 RAD51DO75771 328 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 RHOP08100 348 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 ATXN7L3Q14CW9 347 aaPredicted RBP13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 P4HA3Q7Z4N8 544 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 PCBD2Q9H0N5 130 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 MIOSQ9NXC5 875 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 SCN8AQ9UQD0 1980 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 ATG12O94817 140 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 CLCN3P51790 818 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 C3orf67Q6ZVT6 689 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 FBXO33Q7Z6M2 555 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 CAMK1GQ96NX5 476 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 CACNA1CQ13936 2221 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 ATP10BO94823 1461 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 F5H0A9 414 aaPredicted RBP13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 EPHB6O15197 1021 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 HCRTR2O43614 444 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 SLC3A1Q07837 685 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 ARMC5Q96C12 935 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 ZNF521Q96K83 1311 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 PRORSD1PA6NEY8 169 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 CDH8P55286 799 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 SGCBQ16585 318 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 MINDY4Q4G0A6 757 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 ZNF767PQ75MW2 155 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 NXPE1Q8N323 547 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 CELF1Q92879 486 aaKnown RBP13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 HERC2P3Q9BVR0 1158 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 ADAM18Q9Y3Q7 739 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 ANGPTL7O43827 346 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 TGFB3P10600 412 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 AQP4P55087 323 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 ZNF598Q86UK7 904 aaKnown RBP13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 TWIST2Q8WVJ9 160 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 TBX5Q99593 518 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 SAMD9LQ8IVG5 1584 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 LRRC37A5PQ49AS3 106 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 ZC3HC1Q86WB0 502 aaKnown RBP13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 MRPL41Q8IXM3 137 aaKnown RBP13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 IGDCC4Q8TDY8 1250 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 OR8D1Q8WZ84 308 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 ORAI3Q9BRQ5 295 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 THUMPD1Q9NXG2 353 aaKnown RBP13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 ZNF510Q9Y2H8 683 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 HECW2Q9P2P5 1572 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 B3GALT2O43825 422 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 TBL1XO60907 577 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 CMPK1P30085 196 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 MC4RP32245 332 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 RIDAP52758 137 aaKnown RBP13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 RNF151Q2KHN1 245 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 DEFB128Q7Z7B8 93 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 C3orf58Q8NDZ4 430 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 OR5T1Q8NG75 326 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 CHPT1Q8WUD6 406 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 MAELQ96JY0 434 aaKnown RBP13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 NUP153P49790 1475 aaKnown RBP13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 PSMD10O75832 226 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 CRHR1P34998 444 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 SELENOVP59797 346 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 GPR157Q5UAW9 335 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 TMPRSS7Q7RTY8 843 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 FER1L6Q2WGJ9 1857 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 PNPLA6Q8IY17 1366 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 NOBOXO60393 691 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 HOXC6P09630 235 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 IL7P13232 177 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 DRD4P21917 467 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 FXYD6P3P58550 94 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 GTF2H2Q13888 395 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 ATAT1Q5SQI0 421 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 GPRC6AQ5T6X5 926 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 GTF2H2CQ6P1K8 395 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 TIFAQ96CG3 184 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 RRNAD1Q96FB5 475 aaKnown RBP13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 TMPRSS4Q9NRS4 437 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 INO80Q9ULG1 1556 aaPredicted RBP13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 PRR5-ARHGAP8B1AHC4 643 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 ATE1O95260 518 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 CHKAP35790 457 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 CLCN4P51793 760 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 ARHGAP8P85298 464 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 CD47Q08722 323 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 NCEH1Q6PIU2 408 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 ZDHHC21Q8IVQ6 265 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 PMEPA1Q969W9 287 aa13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 ZBED6CLQ96FA7 236 aaPredicted RBP13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 PRMT6Q96LA8 375 aaPredicted RBP13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 ADAD1Q96M93 576 aaKnown RBP13.09□□□□□ -0.31
CCDC88A-204ENST00000413716 C17orf113A0A1B0GUU1 675 aa13.08□□□□□ -0.31
CCDC88A-204ENST00000413716 C2orf92A0A1B0GVN3 265 aa13.08□□□□□ -0.31
CCDC88A-204ENST00000413716 ZNF670-ZNF695F2Z2N8 137 aa13.08□□□□□ -0.31
CCDC88A-204ENST00000413716 MAPTP10636 758 aaKnown RBP13.08□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms