RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 AAK1Q2M2I8 961 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 C6orf136Q5SQH8 315 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 GARNL3Q5VVW2 1013 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 KCTD11Q693B1 232 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 GDF6Q6KF10 455 aaPredicted RBP11.71□□□□□ -0.54
HMGB1-206ENST00000405805 ZNF544Q6NX49 715 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 ARHGAP12Q8IWW6 846 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 SLC22A15Q8IZD6 547 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 KRTCAP2Q8N6L1 136 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 ACBD6Q9BR61 282 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.71□□□□□ -0.54
HMGB1-206ENST00000405805 HDHD2Q9H0R4 259 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 PDP1Q9P0J1 537 aaPredicted RBP11.71□□□□□ -0.54
HMGB1-206ENST00000405805 ZNFX1Q9P2E3 1918 aaKnown RBP11.71□□□□□ -0.54
HMGB1-206ENST00000405805 AQP9O43315 295 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 KCNE1P15382 129 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 IGFBP5P24593 272 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 UQCRC1P31930 480 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 GKP32189 559 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 ARCN1P48444 511 aaKnown RBP11.71□□□□□ -0.54
HMGB1-206ENST00000405805 HCAR3P49019 387 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 ZNF135P52742 658 aaPredicted RBP11.71□□□□□ -0.54
HMGB1-206ENST00000405805 ZBTB6Q15916 424 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 UAP1L1Q3KQV9 507 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 ANKRD34AQ69YU3 496 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 AFTPHQ6ULP2 937 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 ENPP6Q6UWR7 440 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 C7orf57Q8NEG2 295 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 BRSK1Q8TDC3 778 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 FRS2Q8WU20 508 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 PTCD2Q8WV60 388 aaKnown RBP11.71□□□□□ -0.54
HMGB1-206ENST00000405805 CHMP1AQ9HD42 196 aaPredicted RBP11.71□□□□□ -0.54
HMGB1-206ENST00000405805 CUEDC1Q9NWM3 386 aaPredicted RBP11.71□□□□□ -0.54
HMGB1-206ENST00000405805 MAP10Q9P2G4 905 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 FCF1Q9Y324 198 aaKnown RBP11.71□□□□□ -0.54
HMGB1-206ENST00000405805 TPRKBQ9Y3C4 175 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 PCDHB3Q9Y5E6 796 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 MANSC4A6NHS7 340 aaPredicted RBP11.7□□□□□ -0.54
HMGB1-206ENST00000405805 NDUFS2O75306 463 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 PSKH1P11801 424 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 EPB42P16452 691 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 RFC2P35250 354 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 ATP6V0D1P61421 351 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 QPRTQ15274 297 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 CYP2U1Q7Z449 544 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 SYT12Q8IV01 421 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 HID1Q8IV36 788 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 FEM1CQ96JP0 617 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 FARSBQ9NSD9 589 aaKnown RBP11.7□□□□□ -0.54
HMGB1-206ENST00000405805 VPS9D1Q9Y2B5 631 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 ZNF451Q9Y4E5 1061 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 ZFP37Q9Y6Q3 630 aaPredicted RBP11.7□□□□□ -0.54
HMGB1-206ENST00000405805 A0A1B0GTL3 188 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 MITFO75030 526 aaPredicted RBP11.7□□□□□ -0.54
HMGB1-206ENST00000405805 S100A6P06703 90 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 CKMP06732 381 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 GPX3P22352 226 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 RECQLP46063 649 aaPredicted RBP11.7□□□□□ -0.54
HMGB1-206ENST00000405805 TTPAP49638 278 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 PIK3R6Q5UE93 754 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 AGMOQ6ZNB7 445 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 LARP4Q71RC2 724 aaKnown RBP eCLIP11.7□□□□□ -0.54
HMGB1-206ENST00000405805 ITIH5Q86UX2 942 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 OR4F6Q8NGB9 312 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 SLCO4A1Q96BD0 722 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 FAM126AQ9BYI3 521 aaPredicted RBP11.7□□□□□ -0.54
HMGB1-206ENST00000405805 MFSD1Q9H3U5 465 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 TRIM45Q9H8W5 580 aaPredicted RBP11.7□□□□□ -0.54
HMGB1-206ENST00000405805 CXCR6O00574 342 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 PSIP1O75475 530 aaKnown RBP11.7□□□□□ -0.54
HMGB1-206ENST00000405805 ATF6P18850 670 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 MLLT3P42568 568 aaPredicted RBP11.7□□□□□ -0.54
HMGB1-206ENST00000405805 LEPRP48357 1165 aaKnown RBP11.7□□□□□ -0.54
HMGB1-206ENST00000405805 ERVK-8P63133 956 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 MS4A13Q5J8X5 152 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 ZNF549Q6P9A3 640 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 MBOAT1Q6ZNC8 495 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 HIPK1Q86Z02 1210 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 ADGRG5Q8IZF4 528 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 SLC13A3Q8WWT9 602 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 TOP1MTQ969P6 601 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 BTN2A3PQ96KV6 586 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 ANKRD60Q9BZ19 345 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 REEP1Q9H902 201 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 ZNF556Q9HAH1 456 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 QPCTLQ9NXS2 382 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 TMEM181Q9P2C4 612 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 PSME2Q9UL46 239 aa11.7□□□□□ -0.54
HMGB1-206ENST00000405805 ADAM23O75077 832 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 KLHL18O94889 574 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 INMTO95050 263 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 GLUD1P00367 558 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 PRKAR2AP13861 404 aaKnown RBP11.69□□□□□ -0.54
HMGB1-206ENST00000405805 DNAJB13P59910 316 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 OLR1P78380 273 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 NFATC3Q12968 1075 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 EIF2B5Q13144 721 aaKnown RBP11.69□□□□□ -0.54
HMGB1-206ENST00000405805 PLD1Q13393 1074 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 GTF2H2Q13888 395 aa11.69□□□□□ -0.54
HMGB1-206ENST00000405805 KCNA10Q16322 511 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms