RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.43□□□□□ -0.42
SHMT1-205ENST00000395684 MAGIXQ9H6Y5 334 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 SPC25Q9HBM1 224 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 TMEM165Q9HC07 324 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 GKN1Q9NS71 199 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 OPTCQ9UBM4 332 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 DAPK2Q9UIK4 370 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 PKP3Q9Y446 797 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 PCDHB1Q9Y5F3 818 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 PCDHGB1Q9Y5G3 927 aa12.43□□□□□ -0.42
SHMT1-205ENST00000395684 OR6C75A6NL08 312 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 H0Y626 953 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 M0QX08 132 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 KPNA4O00629 521 aaPredicted RBP12.42□□□□□ -0.42
SHMT1-205ENST00000395684 GAPDHSO14556 408 aaPredicted RBP12.42□□□□□ -0.42
SHMT1-205ENST00000395684 GABARAPO95166 117 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 SLC25A14O95258 325 aaPredicted RBP12.42□□□□□ -0.42
SHMT1-205ENST00000395684 TRIM16O95361 564 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 ANGPTL1O95841 491 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 BCKDHAP12694 445 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 FUT4P22083 530 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 FMO3P31513 532 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 HMGCLP35914 325 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 LSM3P62310 102 aaKnown RBP12.42□□□□□ -0.42
SHMT1-205ENST00000395684 SIM2Q14190 667 aaPredicted RBP12.42□□□□□ -0.42
SHMT1-205ENST00000395684 CARD16Q5EG05 197 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 ZC3H12BQ5HYM0 836 aaKnown RBP12.42□□□□□ -0.42
SHMT1-205ENST00000395684 CPZQ66K79 652 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 ATG9BQ674R7 924 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 ZNF551Q7Z340 670 aaPredicted RBP12.42□□□□□ -0.42
SHMT1-205ENST00000395684 ANKRD46Q86W74 232 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 NDNFQ8TB73 568 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 MCOLN3Q8TDD5 553 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 ZNF566Q969W8 418 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 PYURFQ96I23 114 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 CPPED1Q9BRF8 314 aaPredicted RBP12.42□□□□□ -0.42
SHMT1-205ENST00000395684 INPP5KQ9BT40 448 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 FAM126AQ9BYI3 521 aaPredicted RBP12.42□□□□□ -0.42
SHMT1-205ENST00000395684 GPR63Q9BZJ6 419 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 CLPBQ9H078 707 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 WWOXQ9NZC7 414 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 INTS6Q9UL03 887 aaKnown RBP12.42□□□□□ -0.42
SHMT1-205ENST00000395684 PCDHGA4Q9Y5G9 962 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 TMEM247A6NEH6 219 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 SLC38A8A6NNN8 435 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 FAM220BPB1ANY3 271 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 MANBAO00462 879 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 FZD6O60353 706 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 JRKO75564 520 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 C1QCP02747 245 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 ALDH4A1P30038 563 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 MTA1Q13330 715 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 SMU1Q2TAY7 513 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 FAM26DQ5JW98 314 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 CXorf57Q6NSI4 855 aaKnown RBP12.42□□□□□ -0.42
SHMT1-205ENST00000395684 MBOAT1Q6ZNC8 495 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 CEP68Q76N32 757 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 B3GNT8Q7Z7M8 397 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 HIPK1Q86Z02 1210 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 CHCHD4Q8N4Q1 142 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 PIK3C3Q8NEB9 887 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 OR7A2PQ8NGA2 310 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 TRIB2Q92519 343 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 FAM120BQ96EK7 910 aaKnown RBP12.42□□□□□ -0.42
SHMT1-205ENST00000395684 VMP1Q96GC9 406 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 RHNO1Q9BSD3 238 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 NACA2Q9H009 215 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 HMG20AQ9NP66 347 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 C1orf109Q9NX04 203 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 HECAQ9UBI9 543 aaPredicted RBP12.42□□□□□ -0.42
SHMT1-205ENST00000395684 DLGAP4Q9Y2H0 992 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 PCDHGA10Q9Y5H3 936 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 PMF1-BGLAPU3KQ54 211 aa12.42□□□□□ -0.42
SHMT1-205ENST00000395684 PRAMEF1O95521 474 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 ALDH2P05091 517 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 CYP4B1P13584 511 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 ZNF7P17097 686 aaPredicted RBP12.41□□□□□ -0.42
SHMT1-205ENST00000395684 CDKN2CP42773 168 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 IL18R1Q13478 541 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 GBX1Q14549 363 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 MBTPS1Q14703 1052 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 NPTX1Q15818 432 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 LRRC8DQ7L1W4 858 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 GALNT13Q8IUC8 556 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 USP7Q93009 1102 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 WBP2Q969T9 261 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 DNMT3BQ9UBC3 853 aaKnown RBP12.41□□□□□ -0.42
SHMT1-205ENST00000395684 HCSTQ9UBK5 93 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 PER2O15055 1255 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 ERN1O75460 977 aaKnown RBP12.41□□□□□ -0.42
SHMT1-205ENST00000395684 ITGAMP11215 1152 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 IGFBP5P24593 272 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 PTPN6P29350 595 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 CORO1AP31146 461 aaKnown RBP12.41□□□□□ -0.42
SHMT1-205ENST00000395684 HALP42357 657 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 CLK3P49761 638 aaKnown RBP12.41□□□□□ -0.42
SHMT1-205ENST00000395684 DAPP51397 102 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 VBP1P61758 197 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 SLC14A1Q13336 389 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 RTP2Q5QGT7 225 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms