RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 ADIPOR2Q86V24 386 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 OR4F6Q8NGB9 312 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 ACTRT2Q8TDY3 377 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 ELMO1Q92556 727 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 KCNJ9Q92806 393 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 KLK6Q92876 244 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 RSPRY1Q96DX4 576 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 CGREF1Q99674 301 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 NEK6Q9HC98 313 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 GNPTGQ9UJJ9 305 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 VPS9D1Q9Y2B5 631 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 OAS3Q9Y6K5 1087 aaKnown RBP10.58□□□□□ -0.72
NEDD9-201ENST00000379433 CAPN8A6NHC0 703 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 FBP2O00757 339 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 LRATO95237 230 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 ACRV1P26436 265 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 CCR3P51677 355 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 DGKQP52824 942 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 SF1Q15637 639 aaKnown RBP10.58□□□□□ -0.72
NEDD9-201ENST00000379433 C1orf53Q5VUE5 145 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 TPRG1Q6ZUI0 275 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 NXPE1Q8N323 547 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 ZBTB2Q8N680 514 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 ICA1LQ8NDH6 482 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 ZNF540Q8NDQ6 660 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 FAM110BQ8TC76 370 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 TMEM74Q96NL1 305 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 BARD1Q99728 777 aaKnown RBP10.58□□□□□ -0.72
NEDD9-201ENST00000379433 SARDHQ9UL12 918 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 PCDHGA3Q9Y5H0 932 aa10.58□□□□□ -0.72
NEDD9-201ENST00000379433 TULP3O75386 442 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 NCK1P16333 377 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 RAP1GDS1P52306 607 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 ATP6V0D1P61421 351 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 NRF1Q16656 503 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 IMPG1Q17R60 797 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 RABL3Q5HYI8 236 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 GPRC6AQ5T6X5 926 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 AMIGO2Q86SJ2 522 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 STK40Q8N2I9 435 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 ZNF565Q8N9K5 539 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 OR56A4Q8NGH8 313 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 OR2T11Q8NH01 316 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 PEX13Q92968 403 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 CLP1Q92989 425 aaKnown RBP10.57□□□□□ -0.72
NEDD9-201ENST00000379433 SCRN2Q96FV2 425 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 SERPINI1Q99574 410 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 ACTR8Q9H981 624 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 HSFX1Q9UBD0 423 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 STOML2Q9UJZ1 356 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 PCTPQ9UKL6 214 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 ANGPTL2Q9UKU9 493 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 USP22Q9UPT9 525 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 RNF11Q9Y3C5 154 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 LMNAP02545 664 aaKnown RBP10.57□□□□□ -0.72
NEDD9-201ENST00000379433 ATP5BP06576 529 aaKnown RBP10.57□□□□□ -0.72
NEDD9-201ENST00000379433 CTSLP07711 333 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 NELFEP18615 380 aaKnown RBP10.57□□□□□ -0.72
NEDD9-201ENST00000379433 CCR7P32248 378 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 RPIAP49247 311 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 RPL38P63173 70 aaKnown RBP10.57□□□□□ -0.72
NEDD9-201ENST00000379433 HTRA4P83105 476 aaPredicted RBP10.57□□□□□ -0.72
NEDD9-201ENST00000379433 GTF2H2Q13888 395 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 PTGR1Q14914 329 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 ABRAXAS2Q15018 415 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 GTF2H2CQ6P1K8 395 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 RNF111Q6ZNA4 994 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 GOLGA7Q7Z5G4 137 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 RETREG3Q86VR2 466 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 RALGPS2Q86X27 583 aaPredicted RBP10.57□□□□□ -0.72
NEDD9-201ENST00000379433 MMAAQ8IVH4 418 aaKnown RBP10.57□□□□□ -0.72
NEDD9-201ENST00000379433 PELI3Q8N2H9 469 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 DTX3Q8N9I9 347 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 ARMC5Q96C12 935 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 MEAF6Q9HAF1 191 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 S100A14Q9HCY8 104 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 ELOVL2Q9NXB9 296 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 CACNA2D2Q9NY47 1150 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 STX18Q9P2W9 335 aaKnown RBP10.57□□□□□ -0.72
NEDD9-201ENST00000379433 PTBP2Q9UKA9 531 aaKnown RBP10.57□□□□□ -0.72
NEDD9-201ENST00000379433 ERVW-1Q9UQF0 538 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 DHRS7Q9Y394 339 aa10.57□□□□□ -0.72
NEDD9-201ENST00000379433 POLR3HQ9Y535 204 aaPredicted RBP10.57□□□□□ -0.72
NEDD9-201ENST00000379433 FAM149AA5PLN7 773 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 RAD51BO15315 384 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 NRP2O60462 931 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 ELFN1P0C7U0 828 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 ATXN8OSP0DMR3 200 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 SFTPCP11686 197 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 LBPP18428 481 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 ME2P23368 584 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 IL32P24001 234 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 HK2P52789 917 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 RAC1P63000 192 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 CREMQ03060 361 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 SLC14A2Q15849 920 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 ELMSAN1Q6PJG2 1045 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 CRTC3Q6UUV7 619 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 LARP4Q71RC2 724 aaKnown RBP eCLIP10.56□□□□□ -0.72
NEDD9-201ENST00000379433 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms