RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 CADM2Q8N3J6 435 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 SLC35F5Q8WV83 523 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 LPIN3Q9BQK8 851 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 ZIM2Q9NZV7 527 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 CCDC59Q9P031 241 aaKnown RBP11.21□□□□□ -0.61
PTPRF-203ENST00000372407 GALPQ9UBC7 116 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 RBM7Q9Y580 266 aaKnown RBP11.21□□□□□ -0.61
PTPRF-203ENST00000372407 SLC38A8A6NNN8 435 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 EFCAB9A8MZ26 197 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 ARPC2O15144 300 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 SLC22A1O15245 554 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 IGFBP4P22692 258 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 GSK3BP49841 420 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 ALDH3A2P51648 485 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 AP3S2P59780 193 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 SLC25A11Q02978 314 aaKnown RBP11.21□□□□□ -0.61
PTPRF-203ENST00000372407 MSS51Q4VC12 460 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 KLHL22Q53GT1 634 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 PDE12Q6L8Q7 609 aaKnown RBP11.21□□□□□ -0.61
PTPRF-203ENST00000372407 KCTD13Q8WZ19 329 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 TRNT1Q96Q11 434 aaKnown RBP11.21□□□□□ -0.61
PTPRF-203ENST00000372407 CITED4Q96RK1 184 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 EVA1BQ9NVM1 165 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 TVP23BQ9NYZ1 205 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 MAP10Q9P2G4 905 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 FAM25EA8MYX2 175 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 MYCLP1P12525 358 aaPredicted RBP11.21□□□□□ -0.62
PTPRF-203ENST00000372407 DNAJB1P25685 340 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 IGFALSP35858 605 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 VEGFBP49765 207 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 ILF3Q12906 894 aaKnown RBP eCLIP11.21□□□□□ -0.62
PTPRF-203ENST00000372407 DSC3Q14574 896 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 NDUFA9Q16795 377 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 SLC9A4Q6AI14 798 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 C6orf89Q6UWU4 347 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 TIFABQ6ZNK6 161 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 RANBP3LQ86VV4 465 aaPredicted RBP11.21□□□□□ -0.62
PTPRF-203ENST00000372407 JAZF1Q86VZ6 243 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 ATCAYQ86WG3 371 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 FBXO22Q8NEZ5 403 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 DBF4BQ8NFT6 615 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 C9orf43Q8TAL5 461 aaPredicted RBP11.21□□□□□ -0.62
PTPRF-203ENST00000372407 RBM18Q96H35 190 aaKnown RBP11.21□□□□□ -0.62
PTPRF-203ENST00000372407 SIGLEC10Q96LC7 697 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 EFCAB11Q9BUY7 163 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 CFL2Q9Y281 166 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 PDLIM1O00151 329 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 CLIC1O00299 241 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 ORC5O43913 435 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 CD36P16671 472 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 CCNFP41002 786 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 SMCO1Q147U7 214 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 IQCCQ4KMZ1 466 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 UBXN11Q5T124 520 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 FBXL22Q6P050 247 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 PSRC1Q6PGN9 363 aaPredicted RBP11.21□□□□□ -0.62
PTPRF-203ENST00000372407 RBM23Q86U06 439 aaKnown RBP11.21□□□□□ -0.62
PTPRF-203ENST00000372407 TNFAIP8L1Q8WVP5 186 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 CEP295NLQ96MC4 621 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 TEPSINQ96N21 525 aa11.21□□□□□ -0.62
PTPRF-203ENST00000372407 ZCCHC3Q9NUD5 404 aaKnown RBP11.21□□□□□ -0.62
PTPRF-203ENST00000372407 RPL36Q9Y3U8 105 aaKnown RBP11.21□□□□□ -0.62
PTPRF-203ENST00000372407 A0A1W2PRB8 838 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 PRORSD1PA6NEY8 169 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 H0YGN5 161 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 ECI2O75521 394 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 PLA2G16P53816 162 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 AP1S2P56377 157 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 SLC35G1Q2M3R5 365 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 RNASE12Q5GAN4 147 aaKnown RBP11.2□□□□□ -0.62
PTPRF-203ENST00000372407 RBM48Q5RL73 367 aaKnown RBP11.2□□□□□ -0.62
PTPRF-203ENST00000372407 ADGRF1Q5T601 910 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 FRRS1Q6ZNA5 592 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 PRR23BQ6ZRT6 265 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 BTN2A1Q7KYR7 527 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 OR4C6Q8NH72 309 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 LCN9Q8WX39 176 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 HAVCR1Q96D42 359 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 SLC35G5Q96KT7 338 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 CNPPD1Q9BV87 410 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 CDADC1Q9BWV3 514 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 BCO2Q9BYV7 579 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 TRIM2Q9C040 744 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 TTYH1Q9H313 450 aaPredicted RBP11.2□□□□□ -0.62
PTPRF-203ENST00000372407 TLE6Q9H808 572 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 DNAAF2Q9NVR5 837 aaKnown RBP11.2□□□□□ -0.62
PTPRF-203ENST00000372407 ACTR3BQ9P1U1 418 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 VPS29Q9UBQ0 182 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 NKX1-2Q9UD57 310 aaPredicted RBP11.2□□□□□ -0.62
PTPRF-203ENST00000372407 ZDHHC2Q9UIJ5 367 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 FBXW2Q9UKT8 454 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 RBMX2Q9Y388 322 aaKnown RBP11.2□□□□□ -0.62
PTPRF-203ENST00000372407 NFS1Q9Y697 457 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 TRBV23OR9-2A0A075B6M9 112 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 A0A1W2PRG6 482 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 FABP12A6NFH5 140 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 MTRF1O75570 445 aaKnown RBP11.2□□□□□ -0.62
PTPRF-203ENST00000372407 PRKD3O94806 890 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 IL7RP16871 459 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 VARSP26640 1264 aaKnown RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms