RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 SMIM23A6NLE4 172 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 C16orf96A6NNT2 1141 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 GOLGA8KD6RF30 607 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 POC1B-GALNT4F8VUJ3 575 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 GOLGA8TH3BQL2 631 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 USP1O94782 785 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 VAPBO95292 243 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 PAPSS2O95340 614 aaPredicted RBP3.52□□□□□ -1.85
MCF2-202ENST00000370573 TNFRSF6BO95407 300 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 CLDN7O95471 211 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 KLF8O95600 359 aaPredicted RBP3.52□□□□□ -1.85
MCF2-202ENST00000370573 GLULP15104 373 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 DRD1P21728 446 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 STAT5AP42229 794 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 ZNF140P52738 457 aaPredicted RBP3.52□□□□□ -1.85
MCF2-202ENST00000370573 PFKPQ01813 784 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 ACVR1Q04771 509 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 RAD51Q06609 339 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 FGL2Q14314 439 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 TAF1AQ15573 450 aaPredicted RBP3.52□□□□□ -1.85
MCF2-202ENST00000370573 TIGD6Q17RP2 521 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 KBTBD12Q3ZCT8 623 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 PREPLQ4J6C6 727 aaPredicted RBP3.52□□□□□ -1.85
MCF2-202ENST00000370573 TTMPQ5BVD1 217 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 ZNF805Q5CZA5 627 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 TEDDM1Q5T9Z0 273 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 CRTC1Q6UUV9 634 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 RFLNAQ6ZTI6 216 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 TPRG1Q6ZUI0 275 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 B3GNT8Q7Z7M8 397 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 TSPAN33Q86UF1 283 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 TXNDC5Q8NBS9 432 aaKnown RBP3.52□□□□□ -1.85
MCF2-202ENST00000370573 TMIEQ8NEW7 156 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 DCAKDQ8WVC6 231 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 SNRNP27Q8WVK2 155 aaKnown RBP3.52□□□□□ -1.85
MCF2-202ENST00000370573 FAM3CQ92520 227 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 DNAJC1Q96KC8 554 aaKnown RBP3.52□□□□□ -1.85
MCF2-202ENST00000370573 MCCC1Q96RQ3 725 aaPredicted RBP3.52□□□□□ -1.85
MCF2-202ENST00000370573 AGAP2Q99490 1192 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 GABRG3Q99928 467 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 NAT9Q9BTE0 207 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 KRTAP4-2Q9BYR5 136 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 SUDS3Q9H7L9 328 aaPredicted RBP3.52□□□□□ -1.85
MCF2-202ENST00000370573 TMBIM4Q9HC24 238 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 MAGEE1Q9HCI5 957 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 VPS18Q9P253 973 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 DKK3Q9UBP4 350 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 CTNNAL1Q9UBT7 734 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 SUN2Q9UH99 717 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 DUSP12Q9UNI6 340 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 SLC8A2Q9UPR5 921 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 COA3Q9Y2R0 106 aaPredicted RBP3.52□□□□□ -1.85
MCF2-202ENST00000370573 ZNF711Q9Y462 761 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 MTF2Q9Y483 593 aaPredicted RBP3.52□□□□□ -1.85
MCF2-202ENST00000370573 PSAT1Q9Y617 370 aa3.52□□□□□ -1.85
MCF2-202ENST00000370573 EXOC1LA0A1B0GW35 172 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 A0A1W2PPL8 197 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 A0A1W2PQF6 199 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 CCDC162PA2VCL2 907 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 OR51F1A6NGY5 319 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 B4E171 279 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 KPNA3O00505 521 aaPredicted RBP3.51□□□□□ -1.85
MCF2-202ENST00000370573 RASGRF2O14827 1237 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 SPAG6O75602 509 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 PRSS56P0CW18 603 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 CA4P22748 312 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 LHCGRP22888 699 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 AOAHP28039 575 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 GABRB3P28472 473 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 NTSR1P30989 418 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 STX2P32856 288 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 CA5AP35218 305 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 PHBP35232 272 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 SERPINF1P36955 418 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 TSPAN7P41732 249 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 COPAP53621 1224 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 SLURP1P55000 103 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 NR1H2P55055 460 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 EIF3BP55884 814 aaKnown RBP3.51□□□□□ -1.85
MCF2-202ENST00000370573 MGAT5Q09328 741 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 IFFO1Q0D2I5 559 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 GRSF1Q12849 480 aaKnown RBP eCLIP3.51□□□□□ -1.85
MCF2-202ENST00000370573 PDE1CQ14123 709 aaPredicted RBP3.51□□□□□ -1.85
MCF2-202ENST00000370573 MLF2Q15773 248 aaPredicted RBP3.51□□□□□ -1.85
MCF2-202ENST00000370573 UGP2Q16851 508 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 KRT71Q3SY84 523 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 HSP90AA5PQ58FG0 334 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 TNFAIP8L3Q5GJ75 292 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 EMC4Q5J8M3 183 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 MROH9Q5TGP6 573 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 KIAA0930Q6ICG6 404 aaPredicted RBP3.51□□□□□ -1.85
MCF2-202ENST00000370573 ETV3LQ6ZN32 361 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 PARS2Q7L3T8 475 aaKnown RBP3.51□□□□□ -1.85
MCF2-202ENST00000370573 NLRP9Q7RTR0 991 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 GLT6D1Q7Z4J2 308 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 DCP2Q8IU60 420 aaKnown RBP3.51□□□□□ -1.85
MCF2-202ENST00000370573 MMAAQ8IVH4 418 aaKnown RBP3.51□□□□□ -1.85
MCF2-202ENST00000370573 CNPY4Q8N129 248 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 OR4K2Q8NGD2 314 aa3.51□□□□□ -1.85
MCF2-202ENST00000370573 STT3BQ8TCJ2 826 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms