RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 ZNF658BQ4V348 819 aaPredicted RBP13.32□□□□□ -0.28
VPS29-201ENST00000360579 MFSD7Q6UXD7 560 aa13.32□□□□□ -0.28
VPS29-201ENST00000360579 UNC5AQ6ZN44 842 aa13.32□□□□□ -0.28
VPS29-201ENST00000360579 OVCH1Q7RTY7 1134 aa13.32□□□□□ -0.28
VPS29-201ENST00000360579 DNAJC22Q8N4W6 341 aa13.32□□□□□ -0.28
VPS29-201ENST00000360579 P3H4Q92791 437 aa13.32□□□□□ -0.28
VPS29-201ENST00000360579 LURAP1Q96LR2 239 aa13.32□□□□□ -0.28
VPS29-201ENST00000360579 GBP4Q96PP9 640 aa13.32□□□□□ -0.28
VPS29-201ENST00000360579 LMF1Q96S06 567 aa13.32□□□□□ -0.28
VPS29-201ENST00000360579 NRTNQ99748 197 aa13.32□□□□□ -0.28
VPS29-201ENST00000360579 TRIM56Q9BRZ2 755 aaKnown RBP13.32□□□□□ -0.28
VPS29-201ENST00000360579 PACSIN1Q9BY11 444 aa13.32□□□□□ -0.28
VPS29-201ENST00000360579 SLC26A1Q9H2B4 701 aa13.32□□□□□ -0.28
VPS29-201ENST00000360579 ZDHHC3Q9NYG2 299 aa13.32□□□□□ -0.28
VPS29-201ENST00000360579 SAE1Q9UBE0 346 aaPredicted RBP13.32□□□□□ -0.28
VPS29-201ENST00000360579 PCM1Q15154 2024 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 A0A1B0GX78 115 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 HACD1B0YJ81 288 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 GOLGA6L22H0YM25 854 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 HCRTR1O43613 425 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 CST8O60676 142 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 ONECUT2O95948 504 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 MBD3O95983 291 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 AGTP01019 485 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 COX6B1P14854 86 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 PBX1P40424 430 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 FOXL2P58012 376 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 MFAP5Q13361 173 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 KIR2DS3Q14952 304 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.31□□□□□ -0.28
VPS29-201ENST00000360579 YOD1Q5VVQ6 348 aaPredicted RBP13.31□□□□□ -0.28
VPS29-201ENST00000360579 ITPRIPL1Q6GPH6 555 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 KIRREL2Q6UWL6 708 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 BNC2Q6ZN30 1099 aaPredicted RBP13.31□□□□□ -0.28
VPS29-201ENST00000360579 TTLL10Q6ZVT0 673 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 RHOT2Q8IXI1 618 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 TBC1D21Q8IYX1 336 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 ZNF808Q8N4W9 903 aaPredicted RBP13.31□□□□□ -0.28
VPS29-201ENST00000360579 SLC35G2Q8TBE7 412 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 ITLN2Q8WWU7 325 aaPredicted RBP13.31□□□□□ -0.28
VPS29-201ENST00000360579 THOC3Q96J01 351 aaKnown RBP13.31□□□□□ -0.28
VPS29-201ENST00000360579 SPSB2Q99619 263 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 FICDQ9BVA6 458 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 SEMA3GQ9NS98 782 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 SLC22A11Q9NSA0 550 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 EURLQ9NYK6 297 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 ASF1AQ9Y294 204 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 HS3ST3B1Q9Y662 390 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 HIVEP1P15822 2718 aa13.31□□□□□ -0.28
VPS29-201ENST00000360579 CCDC168Q8NDH2 2452 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 IGLV3-16A0A075B6K0 115 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 QSOX1O00391 747 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 LIN7AO14910 233 aaPredicted RBP13.3□□□□□ -0.28
VPS29-201ENST00000360579 PCDH17O14917 1159 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 AP2A2O94973 939 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 PECAM1P16284 738 aaPredicted RBP13.3□□□□□ -0.28
VPS29-201ENST00000360579 CDKN2BP42772 138 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 TPM4P67936 248 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 FANCCQ00597 558 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 RBBP7Q16576 425 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 NKG7Q16617 165 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 TAZQ16635 292 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 VWA2Q5GFL6 755 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 RANBP10Q6VN20 620 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 RPTNQ6XPR3 784 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 LINC00696Q6ZRV3 163 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 OR5AR1Q8NGP9 310 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 OR1N1Q8NGS0 311 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 NR4A3Q92570 626 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 MAGEB10Q96LZ2 347 aaPredicted RBP13.3□□□□□ -0.28
VPS29-201ENST00000360579 QKIQ96PU8 341 aaKnown RBP eCLIP13.3□□□□□ -0.281e-6■■■■■ 30.1
VPS29-201ENST00000360579 FERMT1Q9BQL6 677 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 GBA3Q9H227 469 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 FAM96AQ9H5X1 160 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 SPHK1Q9NYA1 384 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 IL1RAPL1Q9NZN1 696 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 AAR2Q9Y312 384 aaKnown RBP13.3□□□□□ -0.28
VPS29-201ENST00000360579 CNTRLQ7Z7A1 2325 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 FER1L5A0AVI2 2057 aa13.3□□□□□ -0.28
VPS29-201ENST00000360579 MDC1Q14676 2089 aaKnown RBP13.29□□□□□ -0.28
VPS29-201ENST00000360579 TRAV17A0A0B4J275 112 aa13.29□□□□□ -0.28
VPS29-201ENST00000360579 DYTNA2CJ06 578 aa13.29□□□□□ -0.28
VPS29-201ENST00000360579 ISM1B1AKI9 464 aa13.29□□□□□ -0.28
VPS29-201ENST00000360579 DSCR3O14972 297 aa13.29□□□□□ -0.28
VPS29-201ENST00000360579 ALOX12BO75342 701 aa13.29□□□□□ -0.28
VPS29-201ENST00000360579 CTSBP07858 339 aa13.29□□□□□ -0.28
VPS29-201ENST00000360579 TNNT1P13805 278 aa13.29□□□□□ -0.28
VPS29-201ENST00000360579 ACRV1P26436 265 aa13.29□□□□□ -0.28
VPS29-201ENST00000360579 HTR1EP28566 365 aa13.29□□□□□ -0.28
VPS29-201ENST00000360579 GCGRP47871 477 aa13.29□□□□□ -0.28
VPS29-201ENST00000360579 CARSP49589 748 aaKnown RBP13.29□□□□□ -0.28
VPS29-201ENST00000360579 ZNF140P52738 457 aaPredicted RBP13.29□□□□□ -0.28
VPS29-201ENST00000360579 ARG2P78540 354 aa13.29□□□□□ -0.28
VPS29-201ENST00000360579 TMPRSS15P98073 1019 aa13.29□□□□□ -0.28
VPS29-201ENST00000360579 PLOD1Q02809 727 aaPredicted RBP13.29□□□□□ -0.28
VPS29-201ENST00000360579 ZNF630Q2M218 657 aaPredicted RBP13.29□□□□□ -0.28
VPS29-201ENST00000360579 KAZNQ674X7 775 aa13.29□□□□□ -0.28
VPS29-201ENST00000360579 ZNF324BQ6AW86 544 aaPredicted RBP13.29□□□□□ -0.28
VPS29-201ENST00000360579 GFRALQ6UXV0 394 aa13.29□□□□□ -0.28
VPS29-201ENST00000360579 MRGPRGQ86SM5 289 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms