RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 BNIP1Q12981 228 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 CLEC12AQ5QGZ9 265 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 NPAS4Q8IUM7 802 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 NSMCE3Q96MG7 304 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 ARHGEF28Q8N1W1 1705 aaKnown RBP18.04■□□□□ 0.48
SHANK1-202ENST00000359082 PRAMEF12O95522 483 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 CHRNA4P43681 627 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 NFKB2Q00653 900 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 PYHIN1Q6K0P9 492 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 CLEC4CQ8WTT0 213 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 DUSP26Q9BV47 211 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 EBF3Q9H4W6 596 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 FBXW11Q9UKB1 542 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 TSPAN4O14817 238 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 MTHFD1P11586 935 aaKnown RBP18.04■□□□□ 0.48
SHANK1-202ENST00000359082 GJA8P48165 433 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 GAD2Q05329 585 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 IL10RBQ08334 325 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 SYVN1Q86TM6 617 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 FSTL5Q8N475 847 aaPredicted RBP18.04■□□□□ 0.48
SHANK1-202ENST00000359082 HCAR2Q8TDS4 363 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 STXBP5LQ9Y2K9 1186 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 ELOA3DA6NLF2 546 aaPredicted RBP18.04■□□□□ 0.48
SHANK1-202ENST00000359082 TTC34A8MYJ7 566 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 PLOD2O00469 737 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 GDF10P55107 478 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 GRSF1Q12849 480 aaKnown RBP eCLIP18.04■□□□□ 0.48
SHANK1-202ENST00000359082 ELOA3BQ3SY89 546 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 ELOA3Q8NG57 546 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 C8orf48Q96LL4 319 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 ZNF347Q96SE7 839 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 IL36AQ9UHA7 158 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 DPPA5A6NC42 116 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 SHOX2O60902 331 aaPredicted RBP18.04■□□□□ 0.48
SHANK1-202ENST00000359082 ZNF8P17098 575 aaPredicted RBP18.04■□□□□ 0.48
SHANK1-202ENST00000359082 PBX3P40426 434 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 RASGEF1BQ0VAM2 473 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 PRKD1Q15139 912 aaPredicted RBP18.04■□□□□ 0.48
SHANK1-202ENST00000359082 KLHL22Q53GT1 634 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 MFSD5Q6N075 450 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 MKKSQ9NPJ1 570 aaPredicted RBP18.04■□□□□ 0.48
SHANK1-202ENST00000359082 ARL2P36404 184 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 JAM2P57087 298 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 AP1S1P61966 158 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 RPP38P78345 283 aaKnown RBP18.04■□□□□ 0.48
SHANK1-202ENST00000359082 KLHL26Q53HC5 615 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 VARS2Q5ST30 1063 aaKnown RBP18.04■□□□□ 0.48
SHANK1-202ENST00000359082 ANKRD23Q86SG2 305 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 SLC13A3Q8WWT9 602 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 NR2E1Q9Y466 385 aa18.04■□□□□ 0.48
SHANK1-202ENST00000359082 TRIM64A6NGJ6 449 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 GPR25O00155 361 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 SYN3O14994 580 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 PLGP00747 810 aaPredicted RBP18.03■□□□□ 0.48
SHANK1-202ENST00000359082 MAN2A2P49641 1150 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 NOGQ13253 232 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 OR5K1Q8NHB7 308 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 ERMAPQ96PL5 475 aaPredicted RBP18.03■□□□□ 0.48
SHANK1-202ENST00000359082 ZNF536O15090 1300 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 UGT1A9O60656 530 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 MAP3K8P41279 467 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 MLLT3P42568 568 aaPredicted RBP18.03■□□□□ 0.48
SHANK1-202ENST00000359082 PTGER3P43115 390 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 SGCBQ16585 318 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 PRAMEF17Q5VTA0 474 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 TMEM145Q8NBT3 493 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 BRSK1Q8TDC3 778 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 ARNTL2Q8WYA1 636 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 UGT1A7Q9HAW7 530 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 UGT1A10Q9HAW8 530 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 UGT1A8Q9HAW9 530 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 PCDH7O60245 1069 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 STATHP02808 62 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 GRK5P34947 590 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 ZNF782Q6ZMW2 699 aaPredicted RBP18.03■□□□□ 0.48
SHANK1-202ENST00000359082 KLRG1Q96E93 195 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 GRHL1Q9NZI5 618 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 TLL2Q9Y6L7 1015 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 BTBD19C9JJ37 291 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 ORC5O43913 435 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 NOL4O94818 638 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 F7P08709 466 aaPredicted RBP18.03■□□□□ 0.48
SHANK1-202ENST00000359082 ALPPL2P10696 532 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 FSHRP23945 695 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 L1CAMP32004 1257 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 SLC6A9P48067 706 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 HFE2Q6ZVN8 426 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 C4orf32Q8N8J7 132 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 DENND2DQ9H6A0 471 aaPredicted RBP18.03■□□□□ 0.48
SHANK1-202ENST00000359082 CXorf21Q9HAI6 301 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 BRD7Q9NPI1 651 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 ZNF69Q9UC07 566 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 MEMO1Q9Y316 297 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 PCDHA2Q9Y5H9 948 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 OR2AT4A6NND4 320 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 EFCAB9A8MZ26 197 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 H3BNX3 289 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 REM1O75628 298 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 FKBP1BP68106 108 aa18.03■□□□□ 0.48
SHANK1-202ENST00000359082 OR5AK3PQ8NH89 298 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms