RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 FAM136AQ96C01 138 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 SIGLEC10Q96LC7 697 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 CATSPER2Q96P56 530 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 IL17FQ96PD4 163 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 TCF12Q99081 682 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 FANCEQ9HB96 536 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 SAMD15Q9P1V8 674 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 GALPQ9UBC7 116 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 KCND3Q9UK17 655 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 PYCARDQ9ULZ3 195 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 PCDHGA6Q9Y5G7 932 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 NFS1Q9Y697 457 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 ZCWPW2A0A1B0GU75 182 aa17.75■□□□□ 0.43
CLN3-202ENST00000355477 ISM1B1AKI9 464 aa17.75■□□□□ 0.43
CLN3-202ENST00000355477 CPNE3O75131 537 aaKnown RBP17.75■□□□□ 0.43
CLN3-202ENST00000355477 S1PR4O95977 384 aa17.75■□□□□ 0.43
CLN3-202ENST00000355477 PAMP19021 973 aa17.75■□□□□ 0.43
CLN3-202ENST00000355477 RAB28P51157 221 aa17.75■□□□□ 0.43
CLN3-202ENST00000355477 POLE2P56282 527 aa17.75■□□□□ 0.43
CLN3-202ENST00000355477 MC1RQ01726 317 aa17.75■□□□□ 0.43
CLN3-202ENST00000355477 ERV3-1Q14264 604 aa17.75■□□□□ 0.43
CLN3-202ENST00000355477 PPP1R7Q15435 360 aa17.75■□□□□ 0.43
CLN3-202ENST00000355477 DEFB109BQ30KR1 87 aa17.75■□□□□ 0.43
CLN3-202ENST00000355477 PLEKHS1Q5SXH7 462 aa17.75■□□□□ 0.43
CLN3-202ENST00000355477 RNASEH2BQ5TBB1 312 aaKnown RBP17.75■□□□□ 0.43
CLN3-202ENST00000355477 UNC5DQ6UXZ4 953 aa17.75■□□□□ 0.43
CLN3-202ENST00000355477 ZNF605Q86T29 641 aa17.75■□□□□ 0.43
CLN3-202ENST00000355477 PPIL6Q8IXY8 311 aa17.75■□□□□ 0.43
CLN3-202ENST00000355477 C19orf47Q8N9M1 422 aaKnown RBP17.75■□□□□ 0.43
CLN3-202ENST00000355477 SYTL2Q9HCH5 934 aa17.75■□□□□ 0.43
CLN3-202ENST00000355477 GEMIN8Q9NWZ8 242 aaKnown RBP17.75■□□□□ 0.43
CLN3-202ENST00000355477 RUVBL2Q9Y230 463 aaKnown RBP17.75■□□□□ 0.43
CLN3-202ENST00000355477 PCDHB3Q9Y5E6 796 aa17.75■□□□□ 0.43
CLN3-202ENST00000355477 KRT87PA6NCN2 255 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 B8ZZF3 427 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 C21orf140B9A014 251 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 KPNA5O15131 536 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 MAP3K7O43318 606 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 CREG1O75629 220 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 RPN2P04844 631 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 TCP1P17987 556 aaKnown RBP17.74■□□□□ 0.43
CLN3-202ENST00000355477 OGNP20774 298 aaKnown RBP17.74■□□□□ 0.43
CLN3-202ENST00000355477 CD9P21926 228 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 PTGIRP43119 386 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 CCR10P46092 362 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 GABRA4P48169 554 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 ADARP55265 1226 aaKnown RBP17.74■□□□□ 0.43
CLN3-202ENST00000355477 GNG11P61952 73 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 RPS18P62269 152 aaKnown RBP17.74■□□□□ 0.43
CLN3-202ENST00000355477 NFATC3Q12968 1075 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 CTBP1Q13363 440 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 KIR2DS3Q14952 304 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 SLC5A12Q1EHB4 618 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 CCSMST1Q4G0I0 132 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 RNF187Q5TA31 235 aaPredicted RBP17.74■□□□□ 0.43
CLN3-202ENST00000355477 ZNF517Q6ZMY9 492 aaPredicted RBP17.74■□□□□ 0.43
CLN3-202ENST00000355477 HOOK3Q86VS8 718 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 SPNS2Q8IVW8 549 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 DCUN1D3Q8IWE4 304 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 DENND6AQ8IWF6 608 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 ANP32BQ92688 251 aaKnown RBP17.74■□□□□ 0.43
CLN3-202ENST00000355477 MR1Q95460 341 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 TCTN2Q96GX1 697 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 CAPZA3Q96KX2 299 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 ACTL8Q9H568 366 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 STARD5Q9NSY2 213 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 SERTAD3Q9UJW9 196 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 ANKRD12Q6UB98 2062 aa17.74■□□□□ 0.43
CLN3-202ENST00000355477 HEATR5BQ9P2D3 2071 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 A0A0J9YY10 115 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 H3BMH7 237 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 KDM1AO60341 852 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 C1orf105O95561 183 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 ESR1P03372 595 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 CTSBP07858 339 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 PLA2G2AP14555 144 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 CHRM3P20309 590 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 CYP2A7P20853 494 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 RORAP35398 523 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 BDKRB1P46663 353 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 ITGA1P56199 1179 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 GBX1Q14549 363 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 PAPD7Q5XG87 772 aaKnown RBP17.73■□□□□ 0.43
CLN3-202ENST00000355477 ZNF470Q6ECI4 717 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 TAX1BP1Q86VP1 789 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 CREG2Q8IUH2 290 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 DSELQ8IZU8 1212 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 GSDMBQ8TAX9 411 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 SKA2Q8WVK7 121 aaPredicted RBP17.73■□□□□ 0.43
CLN3-202ENST00000355477 CLIP3Q96DZ5 547 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 LRFN5Q96NI6 719 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 GPR87Q9BY21 358 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 CHST8Q9H2A9 424 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 ACTR5Q9H9F9 607 aaPredicted RBP17.73■□□□□ 0.43
CLN3-202ENST00000355477 PCMTD2Q9NV79 361 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 PCYOX1Q9UHG3 505 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 TSR3Q9UJK0 312 aaKnown RBP17.73■□□□□ 0.43
CLN3-202ENST00000355477 KLHL20Q9Y2M5 609 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 MAD1L1Q9Y6D9 718 aa17.73■□□□□ 0.43
CLN3-202ENST00000355477 MEN1O00255 615 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms