RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 OAZ2O95190 189 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 RENP00797 406 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 ALPIP09923 528 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 GNSP15586 552 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 RNF144AP50876 292 aaPredicted RBP12.4□□□□□ -0.42
SDC3-201ENST00000336798 TAS2R50P59544 299 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 GAD2Q05329 585 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 FKBP1CQ5VVH2 108 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 LCLAT1Q6UWP7 414 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 OR8H3Q8N146 312 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 TSTD1Q8NFU3 115 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 C1orf216Q8TAB5 229 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 NUS1Q96E22 293 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 SLC17A6Q9P2U8 582 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 DAPL1A0PJW8 107 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 WNT7AO00755 349 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 TBX18O95935 607 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 CCNE2O96020 404 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 CYP3A5P20815 502 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 BLMHQ13867 455 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 FAM174BQ3ZCQ3 159 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 RBM12BQ8IXT5 1001 aaKnown RBP12.4□□□□□ -0.42
SDC3-201ENST00000336798 DRAXINQ8NBI3 349 aaPredicted RBP12.4□□□□□ -0.42
SDC3-201ENST00000336798 KREMEN2Q8NCW0 462 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 SETD7Q8WTS6 366 aaKnown RBP12.4□□□□□ -0.42
SDC3-201ENST00000336798 DERAQ9Y315 318 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 GPR89AB7ZAQ6 455 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 ABLIM1O14639 778 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 REM1O75628 298 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 GPR89BP0CG08 455 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 OR3A3P47888 321 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 OR3A2P47893 321 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 IRF9Q00978 393 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 SCGB2B2Q4G0G5 96 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 QSOX2Q6ZRP7 698 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 CEP97Q8IW35 865 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 PROKR2Q8NFJ6 384 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 GPATCH1Q9BRR8 931 aaKnown RBP12.4□□□□□ -0.42
SDC3-201ENST00000336798 LGR4Q9BXB1 951 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 TBL1XR1Q9BZK7 514 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 PLAGL1Q9UM63 463 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 DISP2A7MBM2 1401 aa12.4□□□□□ -0.42
SDC3-201ENST00000336798 A0A1B0GVM2 712 aa12.4□□□□□ -0.43
SDC3-201ENST00000336798 TCAF2A6NFQ2 919 aa12.4□□□□□ -0.43
SDC3-201ENST00000336798 CXCR6O00574 342 aa12.4□□□□□ -0.43
SDC3-201ENST00000336798 LDB2O43679 373 aa12.4□□□□□ -0.43
SDC3-201ENST00000336798 AIREO43918 545 aa12.4□□□□□ -0.43
SDC3-201ENST00000336798 SMPD1P17405 629 aa12.4□□□□□ -0.43
SDC3-201ENST00000336798 TNFRSF8P28908 595 aa12.4□□□□□ -0.43
SDC3-201ENST00000336798 GDI1P31150 447 aa12.4□□□□□ -0.43
SDC3-201ENST00000336798 PRKCDQ05655 676 aa12.4□□□□□ -0.43
SDC3-201ENST00000336798 DGCR14Q96DF8 476 aaKnown RBP12.4□□□□□ -0.43
SDC3-201ENST00000336798 LHX5Q9H2C1 402 aa12.4□□□□□ -0.43
SDC3-201ENST00000336798 TTYH1Q9H313 450 aaPredicted RBP12.4□□□□□ -0.43
SDC3-201ENST00000336798 EIF3KQ9UBQ5 218 aaKnown RBP12.4□□□□□ -0.43
SDC3-201ENST00000336798 GPR25O00155 361 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 UGT1A9O60656 530 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 LDOC1O95751 146 aaPredicted RBP12.39□□□□□ -0.43
SDC3-201ENST00000336798 AP2A1O95782 977 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 UGT1A6P19224 532 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 UGT1A1P22309 533 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 UGT1A4P22310 534 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 RPL10P27635 214 aaKnown RBP12.39□□□□□ -0.43
SDC3-201ENST00000336798 UGT1A3P35503 534 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 KHKP50053 298 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 RALGPS1Q5JS13 557 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 HM13Q8TCT9 377 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 KLRG1Q96E93 195 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 KCNC2Q96PR1 638 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 AGXT2Q9BYV1 514 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 RNF38Q9H0F5 515 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 UGT1A7Q9HAW7 530 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 UGT1A10Q9HAW8 530 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 UGT1A8Q9HAW9 530 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 SMURF1Q9HCE7 757 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.39□□□□□ -0.43
SDC3-201ENST00000336798 ATPIF1Q9UII2 106 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 ZNF878C9JN71 531 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 NDUFS4O43181 175 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 INHAP05111 366 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 ARFRP1Q13795 201 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 HEPACAMQ14CZ8 416 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 ZDHHC21Q8IVQ6 265 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 METTL27Q8N6F8 245 aaPredicted RBP12.39□□□□□ -0.43
SDC3-201ENST00000336798 CPT1BQ92523 772 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 PRICKLE1Q96MT3 831 aaPredicted RBP12.39□□□□□ -0.43
SDC3-201ENST00000336798 IL36AQ9UHA7 158 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 E9PCH4 1651 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 OR14I1A6ND48 311 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 C4BPAP04003 597 aaKnown RBP12.39□□□□□ -0.43
SDC3-201ENST00000336798 BMP6P22004 513 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 FSHRP23945 695 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 CXCR1P25024 350 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 RASGEF1BQ0VAM2 473 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 TYSND1Q2T9J0 566 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 HMBOX1Q6NT76 420 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 BEND4Q6ZU67 534 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 C1orf127Q8N9H9 656 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 TMED5Q9Y3A6 229 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 TMEM150CB9EJG8 249 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms