RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 TAS2R16Q9NYV7 291 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 ERAP1Q9NZ08 941 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 GABRQQ9UN88 632 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 LTBP3Q9NS15 1303 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 PLXNA1Q9UIW2 1896 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 SLC7A4O43246 635 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 LDB2O43679 373 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 RHOBTB1O94844 696 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 SLC19A1P41440 591 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 HTR2BP41595 481 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 CTSKP43235 329 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 CDKN1CP49918 316 aaPredicted RBP13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 FOXD4Q12950 439 aaPredicted RBP13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 TIGD6Q17RP2 521 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 TJAP1Q5JTD0 557 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 SPANXN4Q5MJ08 99 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 BHLHA9Q7RTU4 235 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 ANKRD46Q86W74 232 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 STAG3L4Q8TBR4 150 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 CHAC2Q8WUX2 184 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 JPH3Q8WXH2 748 aaPredicted RBP13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 GTF2H4Q92759 462 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 CLPBQ9H078 707 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 MFSD1Q9H3U5 465 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 RPRD1BQ9NQG5 326 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 DCAF13Q9NV06 445 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 SIRT5Q9NXA8 310 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 NUFIP1Q9UHK0 495 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 LOC110117498-PIK3R3F6TDL0 507 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 MED26O95402 600 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 RPS17P08708 135 aaKnown RBP13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 IFI30P13284 250 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 FADDQ13158 208 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 PTCHD3Q3KNS1 767 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 TRAF7Q6Q0C0 670 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 GPRIN3Q6ZVF9 776 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 ZDHHC21Q8IVQ6 265 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 CYP4Z2PQ8N1L4 340 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 METTL6Q8TCB7 284 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 APH1BQ8WW43 257 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 KCTD13Q8WZ19 329 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 PCED1BQ96HM7 432 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 PDP1Q9P0J1 537 aaPredicted RBP13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 MUTYHQ9UIF7 546 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 MED16Q9Y2X0 877 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 NYNRINQ9P2P1 1898 aaKnown RBP13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 M0R129 80 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 ANKRD28O15084 1053 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 KERAO60938 352 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 CPNE3O75131 537 aaKnown RBP13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 PAGE1O75459 146 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 GLP2RO95838 553 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 ITGAMP11215 1152 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 SLC2A4P14672 509 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 TAF6P49848 677 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 DAB2P98082 770 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 CD83Q01151 205 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 ZNF45Q02386 682 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 GALNT3Q14435 633 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 MFSD10Q14728 455 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 ABRAXAS2Q15018 415 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 CAPN13Q6MZZ7 669 aaPredicted RBP13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 ARMCX2Q7L311 632 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 AMER2Q8N7J2 671 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 SETD9Q8NE22 299 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 PHOX2BQ99453 314 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 UXTQ9UBK9 157 aaPredicted RBP13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 ZNF112Q9UJU3 913 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 BTBD3Q9Y2F9 522 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 ZNF451Q9Y4E5 1061 aa13.16□□□□□ -0.3
CCDC88C-201ENST00000331194 TBKBP1A7MCY6 615 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 PDHXO00330 501 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 BMP1P13497 986 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 CBLP22681 906 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 SLC15A1P46059 708 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 RFX2P48378 723 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 KRT6CP48668 564 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 ZNF135P52742 658 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 GRIK2Q13002 908 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 MAPKAPK3Q16644 382 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 SGO1Q5FBB7 561 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 DTX3Q8N9I9 347 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 SLC13A3Q8WWT9 602 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 KIAA1191Q96A73 305 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 MAP6Q96JE9 813 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 OSMRQ99650 979 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 GPR21Q99679 349 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 COPS4Q9BT78 406 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 ROGDIQ9GZN7 287 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 ABCG8Q9H221 673 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 TFB2MQ9H5Q4 396 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 KCNH4Q9UQ05 1017 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 MROH6A6NGR9 719 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 FFAR3O14843 346 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 PER2O15055 1255 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 GPR42O15529 346 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 LGALS2P05162 132 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 MMP2P08253 660 aa13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 HAPLN1P10915 354 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-201ENST00000331194 PPP3CCP48454 512 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms