RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 RFTN1Q14699 578 aaPredicted RBP14.03□□□□□ -0.16
COL7A1-201ENST00000328333 SEC23BQ15437 767 aa14.03□□□□□ -0.16
COL7A1-201ENST00000328333 RSPH9Q9H1X1 276 aaPredicted RBP14.03□□□□□ -0.16
COL7A1-201ENST00000328333 C1orf196B1AJZ1 125 aa14.02□□□□□ -0.16
COL7A1-201ENST00000328333 ZNF286BP0CG31 522 aa14.02□□□□□ -0.16
COL7A1-201ENST00000328333 FAM171A1Q5VUB5 890 aa14.02□□□□□ -0.16
COL7A1-201ENST00000328333 KANK2Q63ZY3 851 aa14.02□□□□□ -0.16
COL7A1-201ENST00000328333 C7orf50Q9BRJ6 194 aaKnown RBP14.02□□□□□ -0.16
COL7A1-201ENST00000328333 B3GNT4Q9C0J1 378 aa14.02□□□□□ -0.16
COL7A1-201ENST00000328333 AGO3Q9H9G7 860 aaKnown RBP14.02□□□□□ -0.16
COL7A1-201ENST00000328333 OAZ3Q9UMX2 235 aa14.02□□□□□ -0.16
COL7A1-201ENST00000328333 NRCAMQ92823 1304 aa14.02□□□□□ -0.16
COL7A1-201ENST00000328333 PRKYO43930 277 aa14.02□□□□□ -0.16
COL7A1-201ENST00000328333 SCGB2A1O75556 95 aa14.02□□□□□ -0.16
COL7A1-201ENST00000328333 SLC25A14O95258 325 aaPredicted RBP14.02□□□□□ -0.16
COL7A1-201ENST00000328333 PGAM2P15259 253 aa14.02□□□□□ -0.16
COL7A1-201ENST00000328333 NFE2L1Q14494 772 aa14.02□□□□□ -0.16
COL7A1-201ENST00000328333 RAB41Q5JT25 222 aa14.02□□□□□ -0.16
COL7A1-201ENST00000328333 ALG3Q92685 438 aa14.02□□□□□ -0.16
COL7A1-201ENST00000328333 TAS2R9Q9NYW1 312 aa14.02□□□□□ -0.16
COL7A1-201ENST00000328333 DUOX1Q9NRD9 1551 aa14.02□□□□□ -0.16
COL7A1-201ENST00000328333 ANXA4P09525 319 aaPredicted RBP14.02□□□□□ -0.16
COL7A1-201ENST00000328333 ZNF823P16415 610 aa14.02□□□□□ -0.16
COL7A1-201ENST00000328333 PSEN2P49810 448 aa14.02□□□□□ -0.16
COL7A1-201ENST00000328333 MXD1Q05195 221 aa14.02□□□□□ -0.16
COL7A1-201ENST00000328333 A0A1B0GVI7 797 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 DNAJB6O75190 326 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 CLDN11O75508 207 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 RFPL1O75677 317 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 GADD45GO95257 159 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 MAGEA6P43360 314 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 ANKS1BQ7Z6G8 1248 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 GOLM1Q8NBJ4 401 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 OR52J3Q8NH60 311 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 RPLP0P6Q8NHW5 317 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 ZDHHC4Q9NPG8 344 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 UCKL1Q9NWZ5 548 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 ARFGEF2Q9Y6D5 1785 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 TTLL8A6PVC2 850 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 WASHC1A8K0Z3 465 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 WASH3PC4AMC7 463 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 SSX4O60224 188 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 PRPS1L1P21108 318 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 CTBP1Q13363 440 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 GPRC6AQ5T6X5 926 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 HECTD2Q5U5R9 776 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 WASH2PQ6VEQ5 465 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 UBE2R2Q712K3 238 aaPredicted RBP14.02□□□□□ -0.17
COL7A1-201ENST00000328333 MAP4K5Q9Y4K4 846 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 BPNT1O95861 308 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 HPRP00739 348 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 ESR1P03372 595 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 AQP1P29972 269 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 VLDLRP98155 873 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 CDK10Q15131 360 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 SLC30A6Q6NXT4 461 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 GID4Q8IVV7 300 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 MSANTD3Q96H12 275 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 LGMNQ99538 433 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 CPNE5Q9HCH3 593 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 ZNHIT2Q9UHR6 403 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 RXRBP28702 533 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 CLCQ05315 142 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 MEDAGQ5VYS4 303 aa14.02□□□□□ -0.17
COL7A1-201ENST00000328333 NOP16Q9Y3C1 178 aaKnown RBP14.02□□□□□ -0.17
COL7A1-201ENST00000328333 H3BUI4 141 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 CREBL2O60519 120 aaPredicted RBP14.01□□□□□ -0.17
COL7A1-201ENST00000328333 TBX10O75333 385 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 ERAL1O75616 437 aaKnown RBP14.01□□□□□ -0.17
COL7A1-201ENST00000328333 MC4RP32245 332 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 FASTKD3Q14CZ7 662 aaKnown RBP14.01□□□□□ -0.17
COL7A1-201ENST00000328333 NPTX1Q15818 432 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 ZNF367Q7RTV3 350 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 ATAD1Q8NBU5 361 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 TBATAQ96M53 351 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 CASTOR2A6NHX0 329 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 ERCC1P07992 297 aaPredicted RBP14.01□□□□□ -0.17
COL7A1-201ENST00000328333 SLC35G6P0C7Q6 338 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 TFPIP10646 304 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 MED27Q6P2C8 311 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 ZNF627Q7L945 461 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 GRIN3AQ8TCU5 1115 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 CD300LFQ8TDQ1 290 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 FCAMRQ8WWV6 532 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 APOLD1Q96LR9 279 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 HYLS1Q96M11 299 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 SLA2Q9H6Q3 261 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 KCNMB3Q9NPA1 279 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 HCN2Q9UL51 889 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 PTPRMP28827 1452 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 CCL15-CCL14A0A0B4J2E2 113 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 BCAS2O75934 225 aaPredicted RBP14.01□□□□□ -0.17
COL7A1-201ENST00000328333 RECQL4O94761 1208 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 CLCN7P51798 805 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 CD47Q08722 323 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 CCL15Q16663 113 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 ACSBG2Q5FVE4 666 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 IL23RQ5VWK5 629 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 OR10A6Q8NH74 314 aa14.01□□□□□ -0.17
COL7A1-201ENST00000328333 PURBQ96QR8 312 aaKnown RBP14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms