RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 CELF2O95319 508 aaKnown RBP3.1□□□□□ -1.91
HMGB1-201ENST00000326004 PIGNO95427 931 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 INHBAP08476 426 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 QDPRP09417 244 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 ACHEP22303 614 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 MAT1AQ00266 395 aaKnown RBP3.1□□□□□ -1.91
HMGB1-201ENST00000326004 TAF13Q15543 124 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 ZC2HC1CQ53FD0 456 aaPredicted RBP3.1□□□□□ -1.91
HMGB1-201ENST00000326004 C9orf50Q5SZB4 431 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 SFMBT2Q5VUG0 894 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 C11orf63Q6NUN7 778 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 CORO6Q6QEF8 472 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 CUZD1Q86UP6 607 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 FOXP4Q8IVH2 680 aaPredicted RBP3.1□□□□□ -1.91
HMGB1-201ENST00000326004 ARHGAP24Q8N264 748 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 OR1J1Q8NGS3 322 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 OR13J1Q8NGT2 312 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 FGFBP3Q8TAT2 258 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 LRRC8CQ8TDW0 803 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 ROBO4Q8WZ75 1007 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 IRGQQ8WZA9 623 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 SYN2Q92777 582 aaPredicted RBP3.1□□□□□ -1.91
HMGB1-201ENST00000326004 NAF1Q96HR8 494 aaKnown RBP3.1□□□□□ -1.91
HMGB1-201ENST00000326004 EGFL8Q99944 293 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 NAA11Q9BSU3 229 aaPredicted RBP3.1□□□□□ -1.91
HMGB1-201ENST00000326004 TRAF4Q9BUZ4 470 aaPredicted RBP3.1□□□□□ -1.91
HMGB1-201ENST00000326004 BICC1Q9H694 974 aaKnown RBP3.1□□□□□ -1.91
HMGB1-201ENST00000326004 MYNNQ9NPC7 610 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 PFDN4Q9NQP4 134 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 GKN1Q9NS71 199 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 ADPRHL2Q9NX46 363 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 SPHK1Q9NYA1 384 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 FRMD4AQ9P2Q2 1039 aaPredicted RBP3.1□□□□□ -1.91
HMGB1-201ENST00000326004 LRWD1Q9UFC0 647 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 ZDHHC2Q9UIJ5 367 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 CPSF3Q9UKF6 684 aaKnown RBP3.1□□□□□ -1.91
HMGB1-201ENST00000326004 MTUS1Q9ULD2 1270 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 KIAA1210Q9ULL0 1709 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 LTBP4Q8N2S1 1624 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 A0A0U1RQG5 324 aaPredicted RBP3.09□□□□□ -1.91
HMGB1-201ENST00000326004 PRR23D1E9PI22 279 aaPredicted RBP3.09□□□□□ -1.91
HMGB1-201ENST00000326004 CCDC188H7C350 402 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 CLDN4O14493 209 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 CLIC2O15247 247 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 PRKRAO75569 313 aaKnown RBP3.09□□□□□ -1.91
HMGB1-201ENST00000326004 SLCO2B1O94956 709 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 TSHBP01222 138 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 IGHV2-70P01814 119 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 ATP5BP06576 529 aaKnown RBP3.09□□□□□ -1.91
HMGB1-201ENST00000326004 UMODP07911 640 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 PRR23D2P0DMB1 279 aaPredicted RBP3.09□□□□□ -1.91
HMGB1-201ENST00000326004 SAGP10523 405 aaPredicted RBP3.09□□□□□ -1.91
HMGB1-201ENST00000326004 LHX1P48742 406 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 CDH11P55287 796 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 LGALS3BPQ08380 585 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 ACSM1Q08AH1 577 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 HYAL4Q2M3T9 481 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 CCDC184Q52MB2 194 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 SYT14P1Q58G82 188 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 ZBTB49Q6ZSB9 765 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 ERN2Q76MJ5 926 aaKnown RBP3.09□□□□□ -1.91
HMGB1-201ENST00000326004 MARK2Q7KZI7 788 aaKnown RBP3.09□□□□□ -1.91
HMGB1-201ENST00000326004 SLFN11Q7Z7L1 901 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 TMPRSS11BQ86T26 416 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 STPG4Q8N801 248 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 ZNF611Q8N823 705 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 CNBD1Q8NA66 436 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 CAMKVQ8NCB2 501 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 NPEPL1Q8NDH3 523 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 OR10V1Q8NGI7 309 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 KIF18AQ8NI77 898 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 MRPS27Q92552 414 aaKnown RBP3.09□□□□□ -1.91
HMGB1-201ENST00000326004 NSL1Q96IY1 281 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 MUS81Q96NY9 551 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 RAB3IPQ96QF0 476 aaPredicted RBP3.09□□□□□ -1.91
HMGB1-201ENST00000326004 FEVQ99581 238 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 RHNO1Q9BSD3 238 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 PANK2Q9BZ23 570 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 EDEM3Q9BZQ6 932 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 MIS12Q9H081 205 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 PELI2Q9HAT8 420 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 Q9N2K0 584 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 FLRT3Q9NZU0 649 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.09□□□□□ -1.91
HMGB1-201ENST00000326004 TCF19Q9Y242 345 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 TRIM17Q9Y577 477 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 FLT1P17948 1338 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 PCDH11YQ9BZA8 1340 aa3.09□□□□□ -1.91
HMGB1-201ENST00000326004 A0A0G2JLW4 131 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 SMIM1B2RUZ4 78 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 PCDH7O60245 1069 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 CIDEAO60543 219 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 HSPA8P11142 646 aaKnown RBP3.08□□□□□ -1.92
HMGB1-201ENST00000326004 EFNA1P20827 205 aaPredicted RBP3.08□□□□□ -1.92
HMGB1-201ENST00000326004 PTAFRP25105 342 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 MPZP25189 248 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 ITGA3P26006 1051 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 HSPA4P34932 840 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 TIMP3P35625 211 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 CDKN1AP38936 164 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms